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NCBI submission workflow updates viral-pipelines CI #3041: Pull request #583 synchronize by dpark01
March 4, 2025 00:08 28m 42s dp-ncbi
dp-ncbi
March 4, 2025 00:08 28m 42s
percolate batch ids from library/flowcell -> sample/assembly tables viral-pipelines CI #3040: Commit cb8cc79 pushed by dpark01
March 4, 2025 00:08 28m 27s dp-ncbi
dp-ncbi
March 4, 2025 00:08 28m 27s
NCBI submission workflow updates viral-pipelines CI #3039: Pull request #583 synchronize by dpark01
March 3, 2025 21:53 28m 42s dp-ncbi
dp-ncbi
March 3, 2025 21:53 28m 42s
update submit_genbank viral-pipelines CI #3038: Commit 63dae6b pushed by dpark01
March 3, 2025 21:53 28m 36s dp-ncbi
dp-ncbi
March 3, 2025 21:53 28m 36s
NCBI submission workflow updates viral-pipelines CI #3037: Pull request #583 synchronize by dpark01
March 3, 2025 21:21 28m 40s dp-ncbi
dp-ncbi
March 3, 2025 21:21 28m 40s
increase default k2 confidence threshold viral-pipelines CI #3036: Commit 97dbf6f pushed by dpark01
March 3, 2025 21:21 28m 35s dp-ncbi
dp-ncbi
March 3, 2025 21:21 28m 35s
NCBI submission workflow updates viral-pipelines CI #3035: Pull request #583 synchronize by dpark01
March 3, 2025 21:11 10m 41s dp-ncbi
dp-ncbi
March 3, 2025 21:11 10m 41s
add assemble_denovo_metagenomic viral-pipelines CI #3034: Commit 900a7e8 pushed by dpark01
March 3, 2025 21:11 10m 38s dp-ncbi
dp-ncbi
March 3, 2025 21:11 10m 38s
exposed root-sequence parameter of augur ancestral viral-pipelines CI #3033: Commit 6ddf52b pushed by lakras
March 3, 2025 17:08 29m 8s lk-augur-ancestral-root-sequence
lk-augur-ancestral-root-sequence
March 3, 2025 17:08 29m 8s
Merge pull request #582 from broadinstitute/dp-ncbi viral-pipelines CI #3032: Commit bc0f5c2 pushed by lakras
March 3, 2025 16:58 10m 21s lk-augur-ancestral-root-sequence
lk-augur-ancestral-root-sequence
March 3, 2025 16:58 10m 21s
genbank_single: made mapped bam input optional viral-pipelines CI #3031: Pull request #584 synchronize by tomkinsc
March 1, 2025 06:10 28m 38s ct-genbank_single-optional-cmt-input
ct-genbank_single-optional-cmt-input
March 1, 2025 06:10 28m 38s
update testParameterFile for genbank_single to reflect aligned_bam no… viral-pipelines CI #3030: Commit 33f4952 pushed by tomkinsc
March 1, 2025 06:10 27m 53s ct-genbank_single-optional-cmt-input
ct-genbank_single-optional-cmt-input
March 1, 2025 06:10 27m 53s
genbank_single: made mapped bam input optional viral-pipelines CI #3029: Pull request #584 opened by tomkinsc
March 1, 2025 06:02 8m 22s ct-genbank_single-optional-cmt-input
ct-genbank_single-optional-cmt-input
March 1, 2025 06:02 8m 22s
NCBI submission workflow updates viral-pipelines CI #3028: Pull request #583 opened by dpark01
March 1, 2025 03:47 30m 40s dp-ncbi
dp-ncbi
March 1, 2025 03:47 30m 40s
dockstore viral-pipelines CI #3027: Commit 5d8004d pushed by dpark01
March 1, 2025 03:43 29m 48s dp-ncbi
dp-ncbi
March 1, 2025 03:43 29m 48s
huh viral-pipelines CI #3026: Commit 48e80e8 pushed by dpark01
March 1, 2025 01:47 31m 19s dp-ncbi
dp-ncbi
March 1, 2025 01:47 31m 19s
more flu fixes viral-pipelines CI #3025: Commit 4dd6901 pushed by dpark01
March 1, 2025 00:04 29m 11s dp-ncbi
dp-ncbi
March 1, 2025 00:04 29m 11s
attempt ftp-friendly source modifier table viral-pipelines CI #3024: Commit 65bd350 pushed by dpark01
February 28, 2025 23:17 32m 19s dp-ncbi
dp-ncbi
February 28, 2025 23:17 32m 19s
Merge remote-tracking branch 'origin/master' into dp-ncbi viral-pipelines CI #3023: Commit 69b4b24 pushed by dpark01
February 28, 2025 22:26 29m 9s dp-ncbi
dp-ncbi
February 28, 2025 22:26 29m 9s
coerce aligned_bam? to aligned_bam viral-pipelines CI #3022: Commit 8164dee pushed by tomkinsc
February 28, 2025 21:41 24m 51s ct-genbank_single-optional-cmt-input
ct-genbank_single-optional-cmt-input
February 28, 2025 21:41 24m 51s
trying genbank_single behavior with aligned bam input made optional viral-pipelines CI #3021: Commit 63f0b90 pushed by tomkinsc
February 28, 2025 21:31 2m 1s ct-genbank_single-optional-cmt-input
ct-genbank_single-optional-cmt-input
February 28, 2025 21:31 2m 1s
Merge pull request #582 from broadinstitute/dp-ncbi viral-pipelines CI #3020: Commit bc0f5c2 pushed by dpark01
February 28, 2025 16:38 28m 46s master
master
February 28, 2025 16:38 28m 46s
demux and nextclade updates viral-pipelines CI #3019: Pull request #582 synchronize by dpark01
February 28, 2025 14:38 29m 52s dp-ncbi
dp-ncbi
February 28, 2025 14:38 29m 52s
Merge branch 'master' into dp-ncbi viral-pipelines CI #3018: Commit bbe5882 pushed by dpark01
February 28, 2025 14:38 30m 3s dp-ncbi
dp-ncbi
February 28, 2025 14:38 30m 3s
demux and nextclade updates viral-pipelines CI #3017: Pull request #582 opened by dpark01
February 28, 2025 14:38 14s dp-ncbi
dp-ncbi
February 28, 2025 14:38 14s