Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

genbank_single: made mapped bam input optional #584

Open
wants to merge 3 commits into
base: master
Choose a base branch
from

Conversation

tomkinsc
Copy link
Member

@tomkinsc tomkinsc commented Mar 1, 2025

genbank_single: make optional the mapped bam input; if a bam input is not provided, the structured comment that would normally list the assembly method, coverage depth, etc. is omitted from the genbank record.

coerce aligned_bam? to aligned_bam, which may fail at runtime but it shouldn't matter here
…w being exposed as a top-level workflow input
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

1 participant