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PRSQC WDL First Iteration#177

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Merged

kockan merged 16 commits intomainbroadinstitute/palantir-workflows:mainfrom can_prs_qcbroadinstitute/palantir-workflows:can_prs_qcCopy head branch name to clipboardJun 11, 2024

+264-1

Commits

Commits on May 24, 2024

• PRSQC very simple first draft. Expect lots of changes.

  kockan

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  18cca3b

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Commits on May 29, 2024

• Some refinements to the PRSQC wdl

  kockan

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  bad1f0f

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• Dockstore path for testing

  kockan

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  235096c

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• Remove unnecessary variable

  kockan

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  1226101

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• Fixed issues with some variable names

  kockan

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  366577f

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• Refinements

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  29bd443

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• Enforce both sample and control processing for now

  kockan

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  e323e8b

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Commits on May 30, 2024

• Fix expression placeholder syntax

  kockan

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  efd2dd4

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Commits on Jun 6, 2024

• Added option for manually passing controls.

  kockan

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  f64a3f9

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Commits on Jun 10, 2024

• Restructuring

  kockan

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  096f7b1

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• Indentation

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  98c0c2b

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• Fixed expression placeholder

  kockan

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  07365da

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• Fixed output filename

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  923bd7a

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• Added optional control QC values for manual passing

  kockan

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  e0f4d43

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• Added comments regarding the use/generation of alphashapes

  kockan

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  b3f813c

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• More task renaming

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  108b300

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