Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)
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Feb 13, 2025 - Python
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plastome
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Bash scripts for analysis of Hyb-Seq data (from raw reads to species trees/networks)
phylogenetic-networks phylogenomics-pipeline hybseq-data species-tree locus-selection target-enrichment plastome
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Feb 20, 2025 - Shell
Organelle Genome Assembler
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Oct 15, 2021 - Perl
The MitoGeneExtractor can be used to extract protein coding mitochondrial genes, such as COI and others from short and long read sequencing libraries.
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Dec 2, 2024 - C++
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Aug 23, 2020 - Python
Automated pipeline for assembly and annotation of plastid genomes
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Jan 11, 2023 - Shell
get chloroplast and mitochondrial genes from contigs of genome-skimming or transcriptome data
genome transcriptome protein-coding-genes mitochondrial chloroplast contigs plastome genome-skimming
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Feb 15, 2021 - Perl
Chloroplast genome assembly, annotation and phylogenetic relationships of different populations of flowering plants
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Feb 15, 2025 - Nextflow
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Nov 2, 2018
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