Molecular Signatures Database (MSigDB) in a data frame
A web-based application to perform Gene Set Enrichment Analysis (GSEA) using clusterProfiler and shiny R libraries
A web-based application to perform Over-Representation Analysis (ORA) using clusterProfiler and shiny R libraries
GOAT: efficient and robust identification of gene set enrichment
Analysies of gene expression data using Gene Ontology
Get gene sets for gene enrichment analysis (GEA)
GSEA plots in ggplot2
Knowledge-Graph-UI (KG-UI) is an open-source web-based user interface built for KGs stored in Neo4j. The UI features Cypher queries for viewing immediate neighbors as well as shortest paths between two entities. Additionally, the API can be extended to add other functions such as enrichment analysis, and specialized queries.
This is the fork of the Bioconductor-mirror repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/chipenrich.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=chipenrich.
Simple to use package for OMICS data analysis (featuring limma, WGCNA, GSEA)
GeneSetCart is an interactive web-based platform that enables investigators to gather gene sets from various sources; augment these sets with gene-gene co-expression correlations and protein-protein interactions; perform set operations on these sets such as union, consensus, and intersection; and visualize and analyze these gene sets.
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