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Merge pull request #387 from tobac-project/RC_v1.5.x
Merge RC v1.5.2 into main
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| Original file line number | Diff line number | Diff line change |
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| @@ -0,0 +1,13 @@ | ||
| --- | ||
| name: Bug Report | ||
| about: Report a bug in the tobac library | ||
| title: '' | ||
| labels: bug | ||
| assignees: '' | ||
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| --- | ||
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| * [ ] Have you searched the issue tracker for the same problem? | ||
| * [ ] Have you checked if you're using the latest version? If not, which version are you using? | ||
| * [ ] Have you mentioned the steps to reproduce the issue? | ||
| * [ ] Have you, if applicable, included error messages? |
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| Original file line number | Diff line number | Diff line change |
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| @@ -0,0 +1,12 @@ | ||
| --- | ||
| name: Question | ||
| about: 'Ask a general question about tobac ' | ||
| title: '' | ||
| labels: question | ||
| assignees: '' | ||
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| --- | ||
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| * [ ] Have you searched the issue tracker for similar questions? | ||
| * [ ] Have you read the documentation to ensure your question isn't already answered? | ||
| * [ ] Have you searched Stack Overflow or other relevant forums to see if your question has been answered elsewhere? |
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| Original file line number | Diff line number | Diff line change |
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| @@ -0,0 +1,20 @@ | ||
| --- | ||
| name: Release | ||
| about: Prepare a new release for tobac | ||
| title: Release v.X.Y.Z | ||
| labels: release | ||
| assignees: '' | ||
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| --- | ||
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| Checklist for releasing vX.Y.Z: | ||
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| * [ ] Re-run notebooks and commit updates to repository | ||
| * [ ] Bump version in `__init__.py` in `RC_vX.Y.Z` | ||
| * [ ] Add changelog in `RC_vX.Y.Z` | ||
| * [ ] Add new contributors to vX.Y.Z | ||
| * [ ] Merge `RC_vX.Y.Z` into `main` | ||
| * [ ] Delete `RC_vX.Y.Z` branch | ||
| * [ ] Create release | ||
| * [ ] Push release to conda-forge | ||
| * [ ] E-mail tobac mailing list |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,53 @@ | ||
| name: Matrix Testing CI | ||
| # this is similar to the pyart CI action | ||
| on: [push, pull_request] | ||
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| concurrency: | ||
| group: ${{ github.workflow }}-${{ github.ref }} | ||
| cancel-in-progress: true | ||
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| # This job installs dependencies and runs tests across a matrix of python and OS versions. | ||
| #Add if: github.repository == 'tobac-project/tobac' to limit runs to tobac repo | ||
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| jobs: | ||
| build: | ||
| name: ${{ matrix.os }}-${{ matrix.python-version }} | ||
| runs-on: ${{ matrix.os }}-latest | ||
| if: github.repository == 'tobac-project/tobac' | ||
| defaults: | ||
| run: | ||
| shell: bash -l {0} | ||
| strategy: | ||
| fail-fast: false | ||
| matrix: | ||
| python-version: ["3.8", "3.9", "3.10", "3.11"] | ||
| os: [macos, ubuntu, windows] | ||
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| steps: | ||
| - uses: actions/checkout@v2 | ||
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| # Install micromamba and dependencies | ||
| - name: Setup Conda Environment | ||
| uses: mamba-org/setup-micromamba@v1 | ||
| with: | ||
| environment-file: environment-ci.yml | ||
| activate-environment: pyart-dev | ||
| cache-downloads: true | ||
| channels: conda-forge | ||
| channel-priority: strict | ||
| python-version: ${{ matrix.python-version }} | ||
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| - name: Fetch all history for all tags and branches | ||
| run: | | ||
| git fetch --prune --unshallow | ||
| - name: Install tobac | ||
| shell: bash -l {0} | ||
| run: | | ||
| python -m pip install -e . --no-deps --force-reinstall | ||
| - name: Run Tests | ||
| id: run_tests | ||
| shell: bash -l {0} | ||
| run: | | ||
| python -m pytest -v |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,86 @@ | ||
| name: Linting | ||
| on: | ||
| pull_request_target: | ||
| branches: | ||
| - '*' | ||
| permissions: | ||
| pull-requests: write | ||
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| jobs: | ||
| build: | ||
| runs-on: ubuntu-latest | ||
| defaults: | ||
| run: | ||
| shell: bash -l {0} | ||
| steps: | ||
| - name: Check out Git repository | ||
| uses: actions/checkout@v3 | ||
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| - name: Set up conda | ||
| uses: conda-incubator/setup-miniconda@v2 | ||
| with: | ||
| miniforge-version: latest | ||
| miniforge-variant: mambaforge | ||
| channel-priority: strict | ||
| channels: conda-forge | ||
| show-channel-urls: true | ||
| use-only-tar-bz2: true | ||
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| - name: Install tobac and pylint | ||
| run: | | ||
| mamba install --yes pylint | ||
| pip install . | ||
| - name: Store the PR branch | ||
| run: | | ||
| echo "SHA=$(git rev-parse "$GITHUB_SHA")" >> $GITHUB_OUTPUT | ||
| id: git | ||
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| - name: Checkout RC branch | ||
| uses: actions/checkout@v3 | ||
| with: | ||
| ref: ${{ github.base_ref }} | ||
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| - name: Get pylint score of RC branch | ||
| run: | | ||
| pylint tobac --disable=C --exit-zero | ||
| id: main_score | ||
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| - name: Checkout PR branch | ||
| uses: actions/checkout@v3 | ||
| with: | ||
| ref: "${{ steps.git.outputs.SHA }}" | ||
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| - name: Get pylint score of PR branch | ||
| run: | | ||
| # use shell script to save only tail of output | ||
| OUTPUT_PART=$(pylint tobac --disable=C --exit-zero | tail -n 2) | ||
| # but post entire output in the action details | ||
| pylint tobac --disable=C --exit-zero | ||
| # define random delimiter for multiline string | ||
| EOF=$(dd if=/dev/urandom bs=15 count=1 status=none | base64) | ||
| echo "MESSAGE<<$EOF" >> "$GITHUB_OUTPUT" | ||
| echo "$OUTPUT_PART" >> "$GITHUB_OUTPUT" | ||
| echo "$EOF" >> "$GITHUB_OUTPUT" | ||
| id: pr_score | ||
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| - name: Find Comment | ||
| uses: peter-evans/find-comment@v2 | ||
| id: comment | ||
| with: | ||
| issue-number: ${{ github.event.pull_request.number }} | ||
| comment-author: 'github-actions[bot]' | ||
| body-includes: Linting results by Pylint | ||
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| - name: Post result to PR | ||
| uses: peter-evans/create-or-update-comment@v3 | ||
| with: | ||
| issue-number: ${{ github.event.pull_request.number }} | ||
| comment-id: ${{ steps.comment.outputs.comment-id }} | ||
| edit-mode: replace | ||
| body: | | ||
| Linting results by Pylint: | ||
| -------------------------- | ||
| ${{ steps.pr_score.outputs.MESSAGE }} | ||
| <sub>The linting score is an indicator that reflects how well your code version follows Pylint’s coding standards and quality metrics with respect to the ${{ github.base_ref }} branch. | ||
| A decrease usually indicates your new code does not fully meet style guidelines or has potential errors.<sup> |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,6 +1,9 @@ | ||
| version: 2 | ||
| formats: all | ||
| build: | ||
| os: ubuntu-22.04 | ||
| tools: | ||
| python: "3.9" | ||
| python: | ||
| version: 3 | ||
| install: | ||
| - requirements: doc/requirements.txt | ||
| - requirements: doc/requirements.txt |
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| Original file line number | Diff line number | Diff line change |
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@@ -12,4 +12,4 @@ trackpy | |
| pre-commit | ||
| black | ||
| pytest | ||
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| typing_extensions | ||
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| Original file line number | Diff line number | Diff line change |
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| @@ -0,0 +1,10 @@ | ||
| ########################## | ||
| Compute bulk statistics | ||
| ########################## | ||
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| .. toctree:: | ||
| :maxdepth: 2 | ||
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| notebooks/compute_statistics_during_feature_detection_example | ||
| notebooks/compute_statistics_during_segmentation_example | ||
| notebooks/compute_statistics_postprocessing_example |
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