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@qiime2

QIIME 2

Welcome to the QIIME 2 GitHub Organization! 👋

If you're a QIIME 2 user or developer, or are thinking about becoming one, refer to our Support Guidelines for details on how to learn or get help with QIIME 2.

If you're interested in contributing to repositories in the qiime2 GitHub organization, please start by reading our Contributing Guidelines.

This organization is primarily managed by the Caporaso Lab at Northern Arizona University, but has contributors from all over the world. If you have questions that aren't covered in the resources above, the best way to reach us is on the QIIME 2 Forum - it's where we hang out.

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  1. qiime2 qiime2 Public

    Official repository for the QIIME 2 framework.

    Python 494 240

  2. distributions distributions Public

    Makefile 1 5

  3. q2cli q2cli Public

    Command line interface for QIIME 2

    Python 19 24

  4. docs docs Public

    Python 21 58

Repositories

Showing 10 of 76 repositories
  • library Public

    A website for sharing QIIME 2 Plugins

    qiime2/library’s past year of commit activity
    Svelte 0 BSD-3-Clause 1 2 1 Updated Mar 6, 2025
  • q2view Public

    A web-based "serverless" viewer of QIIME 2 Artifacts and Visualizations

    qiime2/q2view’s past year of commit activity
    TypeScript 1 BSD-3-Clause 1 4 3 Updated Mar 6, 2025
  • amplicon-docs Public

    Source for QIIME 2 amplicon documentation.

    qiime2/amplicon-docs’s past year of commit activity
    Makefile 0 0 2 2 Updated Mar 5, 2025
  • library-plugins Public

    Stores a list of the repos that are included in the QIIME 2 library

    qiime2/library-plugins’s past year of commit activity
    0 BSD-3-Clause 5 0 2 Updated Mar 6, 2025
  • q2-fmt Public

    q2-fmt is an all-in-one suite for assessing engraftment extent following Fecal Microbiota Transplants!

    qiime2/q2-fmt’s past year of commit activity
    Python 4 BSD-3-Clause 11 7 2 Updated Mar 4, 2025
  • distributions Public
    qiime2/distributions’s past year of commit activity
    Makefile 1 BSD-3-Clause 5 6 0 Updated Mar 4, 2025
  • qiime2/q2-composition’s past year of commit activity
    Python 6 BSD-3-Clause 27 7 1 Updated Feb 28, 2025
  • q2-types Public
    qiime2/q2-types’s past year of commit activity
    Python 17 BSD-3-Clause 42 25 (3 issues need help) 2 Updated Feb 27, 2025
  • q2doc Public

    A MyST executable plugin for documenting QIIME 2 plugins.

    qiime2/q2doc’s past year of commit activity
    Python 0 0 2 0 Updated Feb 26, 2025
  • q2-feature-classifier Public

    QIIME 2 plugin supporting taxonomic classification

    qiime2/q2-feature-classifier’s past year of commit activity
    Python 19 BSD-3-Clause 38 8 (2 issues need help) 1 Updated Feb 20, 2025

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