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add link to preprint
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pmenzel authored Aug 10, 2022
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A snakemake-wrapper for easily creating *de novo* bacterial genome assemblies from Oxford Nanopore (ONT) sequencing data, and optionally Illumina data,
using any combination of read filtering, assembly, long and short read polishing, and reference-based polishing.

See the preprint here: [Snakemake Workflows for Long-read Bacterial Genome Assembly and Evaluation, Preprints.org 2022](https://www.preprints.org/manuscript/202208.0191/v1)

## Included programs

| read filtering | assembly | long read polishing | short read polishing | reference-based polishing |
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