pycurl more relaxed conditions

phac-nml · Sep 4, 2024 · a5fed55 · a5fed55
1 parent 8836d5c
commit a5fed55
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Showing 3 changed files with 4 additions and 2 deletions.
diff --git a/.github/workflows/github-actions.yaml b/.github/workflows/github-actions.yaml
@@ -29,7 +29,7 @@ jobs:
         sudo apt-get install mash ncbi-blast+ libssl-dev libcurl4-openssl-dev mafft libssl-dev ca-certificates -y
         sudo apt-get install python3-pip python3-dev python3-biopython -y
         python3 -m pip install --upgrade pip setuptools
-        pip3 install pytest fastcluster openpyxl pycurl pandas scipy
+        pip3 install pytest fastcluster openpyxl pycurl pandas "scipy==1.5.4"
         python3 -c "import pycurl"
         python setup.py install
     - name: Test  with pytest

diff --git a/setup.py b/setup.py
@@ -47,7 +47,7 @@ def run(self):
         'install': CustomInstallCommand
     },
     install_requires=[
-        'numpy>=1.11.1',
+        'numpy>=1.11.1,<1.23.5',
         'tables>=3.3.0,<4',
         'pandas>=0.22.0,<3',
         'pycurl>=7.43.0,<8',

diff --git a/sistr/sistr_cmd.py b/sistr/sistr_cmd.py
@@ -203,6 +203,8 @@ def download_to_file(url,file):
         # Follow redirect.
         c.setopt(c.FOLLOWLOCATION, True)
         c.setopt(c.WRITEDATA, f)
+        c.setopt(pycurl.SSL_VERIFYPEER, 0)
+        c.setopt(pycurl.SSL_VERIFYHOST, 0)
         c.perform()
         c.close()