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    210 repositories

    • amazon-genomics-cli

      Public
      Go
      •
      Apache License 2.0
      •82•0•0•0•Updated Sep 29, 2021Sep 29, 2021

    • ANGEL

      Public
      Robust Open Reading Frame prediction (ANGLE re-implementation)
      Python
      •
      Other
      •14•0•0•0•Updated Aug 2, 2021Aug 2, 2021

    • prokka

      Public
      ⚡ ♒ Rapid prokaryotic genome annotation
      Perl
      •228•0•0•0•Updated May 27, 2021May 27, 2021

    • tesseract

      Public
      Tesseract Open Source OCR Engine (main repository)
      C++
      •
      Apache License 2.0
      •9.8k•0•0•0•Updated Apr 17, 2021Apr 17, 2021

    • layout-parser

      Public
      A unified toolkit for Deep Learning Based Document Image Analysis
      Python
      •
      Apache License 2.0
      •489•0•0•0•Updated Apr 15, 2021Apr 15, 2021

    • awesome-nextflow

      Public
      A curated list of nextflow based pipelines
      Creative Commons Zero v1.0 Universal
      •89•0•0•0•Updated Dec 19, 2020Dec 19, 2020

    • nextflow-tutorial

      Public
      Nextflow training material for introductory tutorial
      Nextflow
      •
      MIT License
      •55•0•0•0•Updated Nov 19, 2020Nov 19, 2020

    • indra-1

      Public
      INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, produce causal graphs and dynamical models.
      Python
      •
      BSD 2-Clause "Simplified" License
      •69•0•0•0•Updated Oct 27, 2020Oct 27, 2020

    • pubmed_parser

      Public
      📋 A Python Parser for PubMed Open-Access XML Subset and MEDLINE XML Dataset
      Python
      •
      MIT License
      •171•0•0•0•Updated Oct 3, 2020Oct 3, 2020

    • xCell

      Public
      Cell types enrichment analysis
      R
      •63•0•0•0•Updated Aug 20, 2020Aug 20, 2020

    • LinkedIn-Daily-Posts

      Public
      This is a curated list of all my posts on LinkedIn regarding Data Science, which I publish daily.
      4•0•0•0•Updated Aug 3, 2020Aug 3, 2020

    • NERtwork

      Public
      NERtwork is a collection of scripts to help you create a network graph of co-occurring named entities using open source tools. This is done by using Stanford Named Entity Recognizer to identify named entities in the documents, then using NetworkX to create a bipartite projected network and exporting the node and edge lists for use in network vis…
      Python
      •
      Mozilla Public License 2.0
      •11•0•0•0•Updated Jul 22, 2020Jul 22, 2020

    • PdfExtraction

      Public
      Program to extract text from pdfs.
      Python
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Jul 16, 2020Jul 16, 2020

    • cheatsheets

      Public
      Official Matplotlib cheat sheets
      Python
      •
      BSD 2-Clause "Simplified" License
      •906•0•0•0•Updated Jul 11, 2020Jul 11, 2020

    • extract-text-from-pdf-using-python

      Public
      Python
      •1•0•0•0•Updated Jul 4, 2020Jul 4, 2020

    • extracting-text--from-pdf-using-Python-

      Public
      Python
      •0•0•0•0•Updated Jul 3, 2020Jul 3, 2020

    • scihub.py

      Public
      Python API and command-line tool for Sci-Hub
      Python
      •
      MIT License
      •228•0•0•0•Updated Jun 19, 2020Jun 19, 2020

    • Pandas-Bokeh

      Public
      Bokeh Plotting Backend for Pandas and GeoPandas
      Python
      •
      MIT License
      •114•0•0•0•Updated May 25, 2020May 25, 2020

    • patents-public-data

      Public
      Patent analysis using the Google Patents Public Datasets on BigQuery
      Jupyter Notebook
      •
      Apache License 2.0
      •167•0•0•0•Updated May 20, 2020May 20, 2020

    • awesome

      Public
      😎 Awesome lists about all kinds of interesting topics
      Creative Commons Zero v1.0 Universal
      •29k•0•0•0•Updated May 11, 2020May 11, 2020

    • free-for-dev

      Public
      A list of SaaS, PaaS and IaaS offerings that have free tiers of interest to devops and infradev
      HTML
      •10k•0•0•0•Updated May 11, 2020May 11, 2020

    • awesome-for-beginners

      Public
      A list of awesome beginners-friendly projects.
      7.2k•0•0•0•Updated May 9, 2020May 9, 2020

    • google_patent_scraper

      Public
      A python module to scrape patents from 'https://patents.google.com/'.
      Python
      •
      MIT License
      •34•0•0•0•Updated May 7, 2020May 7, 2020

    • free-programming-books

      Public
      📚 Freely available programming books
      Other
      •63k•0•0•0•Updated May 6, 2020May 6, 2020

    • wtfjs

      Public
      A list of funny and tricky JavaScript examples
      JavaScript
      •
      Do What The F*ck You Want To Public License
      •2.6k•0•0•0•Updated May 6, 2020May 6, 2020

    • clean-code-javascript

      Public
      🛁 Clean Code concepts adapted for JavaScript
      JavaScript
      •
      MIT License
      •12k•0•0•0•Updated May 3, 2020May 3, 2020

    • ip-navigator

      Public
      A modular patent information research platform and data integration toolkit with a modern user interface and access to multiple data sources.
      Python
      •
      GNU Affero General Public License v3.0
      •22•0•0•0•Updated Apr 29, 2020Apr 29, 2020

    • javascript-questions

      Public
      A long list of (advanced) JavaScript questions, and their explanations ✨
      MIT License
      •9.1k•0•0•0•Updated Apr 16, 2020Apr 16, 2020

    • javascript-algorithms

      Public
      📝 Algorithms and data structures implemented in JavaScript with explanations and links to further readings
      JavaScript
      •
      MIT License
      •31k•0•0•0•Updated Apr 15, 2020Apr 15, 2020

    • kg-covid-19

      Public
      KG hub to produce a knowledge graph for COVID-19 and SARS-COV-2
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •26•0•0•0•Updated Apr 8, 2020Apr 8, 2020