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2025/03 Release

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@tsuchiyama-araya tsuchiyama-araya released this 17 Mar 14:37
· 24 commits to main since this release
v2.0.1
d5e2394
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Learn about vigilant mode.

Documentation & User Support

  • Create a tutorial on how to specify machines for the front-end and back-end.
  • Enhance the FAQ and troubleshooting sections with more detailed error messages.

Workflow & Functionality Improvements

  • Separate Snakemake environment setup from actual computation.
  • Add a function to select cells, considering selection methods (same as ID88).
  • Display descriptions for functions and parameters.
  • Implement a feature to copy workflows with a new ID.
  • Improve ROI-Fluo visualization: Selecting a fluorescence trace should highlight the corresponding ROI cell.
  • Enable bulk display of cell numbers in the ROI screen.
  • Introduce a method to prevent zombie processes (e.g., prompt users on startup whether to display past processes).
  • Add a new node for roi_fluo_from_hdf5.

Bug Fixes & Technical Enhancements

  • Fix bug where, after editing ROI (Commit) in s2o, the saved NWB fluorescence dimensions are reversed.
  • Fix issue where drag-selecting after reproduction causes a front-end clash.
  • Simplify the process of adding new modules, making it easier to check functionality after implementation.
  • Upgrade Caiman to move beyond Python 3.8.
  • Implement of terminal content in the front-end.
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