Merge pull request #40 from obophenotype/ODK-Release-November-27-2022

ODK Release November 27 2022
obophenotype · Nov 27, 2022 · ccd9db6 · ccd9db6
2 parents 550214b + 9934c93
commit ccd9db6
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Showing 14 changed files with 1,116 additions and 201 deletions.
diff --git a/src/ontology/imports/ro_import.owl b/src/ontology/imports/ro_import.owl
diff --git a/src/ontology/reports/wbls-edit.owl-obo-report.tsv b/src/ontology/reports/wbls-edit.owl-obo-report.tsv
@@ -1,3 +1,2 @@
 Level	Rule Name	Subject	Property	Value
-WARN	duplicate_label_synonym	cysticercoid stage	has_exact_synonym	cysticercoid stage
 INFO	missing_superclass	worm life stage	rdfs:subClassOf	
diff --git a/wbls-base.json b/wbls-base.json
@@ -10771,10 +10771,10 @@
           },
           {
             "pred": "http://www.w3.org/2002/07/owl#versionInfo",
-            "val": "2022-10-21"
+            "val": "2022-11-27"
           }
         ],
-        "version": "http://purl.obolibrary.org/obo/wbls/releases/2022-10-21/wbls-base.json"
+        "version": "http://purl.obolibrary.org/obo/wbls/releases/2022-11-27/wbls-base.json"
       },
       "nodes": [
         {
@@ -34592,13 +34592,7 @@
               "xrefs": [
                 "WB:jl"
               ]
-            },
-            "synonyms": [
-              {
-                "pred": "hasExactSynonym",
-                "val": "cysticercoid stage"
-              }
-            ]
+            }
           },
           "type": "CLASS"
         },

diff --git a/wbls-base.obo b/wbls-base.obo
@@ -1,5 +1,5 @@
 format-version: 1.2
-data-version: wbls/releases/2022-10-21/wbls-base.owl
+data-version: wbls/releases/2022-11-27/wbls-base.owl
 date: 15:11:2017 12:24
 saved-by: chris-grove
 auto-generated-by: OBO-Edit 2.2-rc1
@@ -12,7 +12,7 @@ property_value: http://purl.org/dc/elements/1.1/title "C. elegans Development On
 property_value: http://purl.org/dc/elements/1.1/type IAO:8000001
 property_value: http://purl.org/dc/terms/license http://creativecommons.org/licenses/by/4.0/ xsd:string
 property_value: IAO:0000700 WBls:0000075
-property_value: owl:versionInfo "2022-10-21" xsd:string
+property_value: owl:versionInfo "2022-11-27" xsd:string
 
 [Term]
 id: WBls:0000001
@@ -7679,7 +7679,6 @@ creation_date: 2016-03-17T15:02:35Z
 id: WBls:0000717
 name: cysticercoid stage
 def: "A larval stage of some cestodes, including Hymenolepis sp. The cysticercoid is a type of cyst that is found in free form as well as being tissue-enclosed." [WB:jl]
-synonym: "cysticercoid stage" EXACT []
 is_a: WBls:0000712 ! Cestoda life stage
 relationship: part_of WBls:0000716 ! metacestode
 created_by: jl16

diff --git a/wbls-base.owl b/wbls-base.owl
@@ -11,7 +11,7 @@
      xmlns:terms="http://purl.org/dc/terms/"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/wbls/wbls-base.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/wbls/releases/2022-10-21/wbls-base.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/wbls/releases/2022-11-27/wbls-base.owl"/>
         <obo:IAO_0000700 rdf:resource="http://purl.obolibrary.org/obo/WBls_0000075"/>
         <dc:description>Ontology about the development and life stages of the C. elegans</dc:description>
         <dc:title>C. elegans Development Ontology</dc:title>
@@ -24,7 +24,7 @@
         <oboInOwl:saved-by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">chris-grove</oboInOwl:saved-by>
         <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Editors: Wen J. Chen &amp; Daniela Raciti, Raymond Lee, Chris Grove, WormBase, Caltech. Jane Lomax, Wellcome Trust Sanger Institute.</rdfs:comment>
         <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Version: 1.04</rdfs:comment>
-        <owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2022-10-21</owl:versionInfo>
+        <owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2022-11-27</owl:versionInfo>
     </owl:Ontology>
 
 
@@ -23762,7 +23762,6 @@
         <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A larval stage of some cestodes, including Hymenolepis sp. The cysticercoid is a type of cyst that is found in free form as well as being tissue-enclosed.</obo:IAO_0000115>
         <oboInOwl:created_by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">jl16</oboInOwl:created_by>
         <oboInOwl:creation_date rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2016-03-18T11:15:07Z</oboInOwl:creation_date>
-        <oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">cysticercoid stage</oboInOwl:hasExactSynonym>
         <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">worm_development</oboInOwl:hasOBONamespace>
         <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">WBls:0000717</oboInOwl:id>
         <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">cysticercoid stage</rdfs:label>

diff --git a/wbls-full.json b/wbls-full.json
diff --git a/wbls-full.obo b/wbls-full.obo
diff --git a/wbls-full.owl b/wbls-full.owl
diff --git a/wbls-simple.json b/wbls-simple.json
@@ -13697,10 +13697,10 @@
           },
           {
             "pred": "http://www.w3.org/2002/07/owl#versionInfo",
-            "val": "2022-10-21"
+            "val": "2022-11-27"
           }
         ],
-        "version": "http://purl.obolibrary.org/obo/wbls/releases/2022-10-21/wbls-simple.json"
+        "version": "http://purl.obolibrary.org/obo/wbls/releases/2022-11-27/wbls-simple.json"
       },
       "nodes": [
         {
@@ -37684,13 +37684,7 @@
               "xrefs": [
                 "WB:jl"
               ]
-            },
-            "synonyms": [
-              {
-                "pred": "hasExactSynonym",
-                "val": "cysticercoid stage"
-              }
-            ]
+            }
           },
           "type": "CLASS"
         },

diff --git a/wbls-simple.obo b/wbls-simple.obo
@@ -1,5 +1,5 @@
 format-version: 1.2
-data-version: wbls/releases/2022-10-21/wbls-simple.owl
+data-version: wbls/releases/2022-11-27/wbls-simple.owl
 date: 15:11:2017 12:24
 saved-by: chris-grove
 auto-generated-by: OBO-Edit 2.2-rc1
@@ -8254,7 +8254,6 @@ creation_date: 2016-03-17T15:02:35Z
 id: WBls:0000717
 name: cysticercoid stage
 def: "A larval stage of some cestodes, including Hymenolepis sp. The cysticercoid is a type of cyst that is found in free form as well as being tissue-enclosed." [WB:jl]
-synonym: "cysticercoid stage" EXACT []
 is_a: WBls:0000712 ! Cestoda life stage
 relationship: part_of WBls:0000716 ! metacestode
 created_by: jl16

diff --git a/wbls-simple.owl b/wbls-simple.owl
@@ -11,7 +11,7 @@
      xmlns:terms="http://purl.org/dc/terms/"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/wbls/wbls-simple.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/wbls/releases/2022-10-21/wbls-simple.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/wbls/releases/2022-11-27/wbls-simple.owl"/>
         <obo:IAO_0000700 rdf:resource="http://purl.obolibrary.org/obo/WBls_0000075"/>
         <dc:description>Ontology about the development and life stages of the C. elegans</dc:description>
         <dc:title>C. elegans Development Ontology</dc:title>
@@ -24400,7 +24400,6 @@ A continuant cannot be part of an occurrent: use &apos;participates in&apos;. An
         <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A larval stage of some cestodes, including Hymenolepis sp. The cysticercoid is a type of cyst that is found in free form as well as being tissue-enclosed.</obo:IAO_0000115>
         <oboInOwl:created_by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">jl16</oboInOwl:created_by>
         <oboInOwl:creation_date rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2016-03-18T11:15:07Z</oboInOwl:creation_date>
-        <oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">cysticercoid stage</oboInOwl:hasExactSynonym>
         <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">worm_development</oboInOwl:hasOBONamespace>
         <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">WBls:0000717</oboInOwl:id>
         <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">cysticercoid stage</rdfs:label>