add extdata and set GITHUB_ENV

.github/workflows/rworkflows.yml

@@ -28,13 +28,17 @@ jobs:
           cont: docker.io/tomrrr1/bioconductor_meme:latest
           rspm: ~
     steps:
-    - name: Create directory and symlink
-      run: |
-        mkdir -p /github/home/meme
-        ln -s /meme/bin /github/home/meme/bin
-    - name: Verify symbolic link
-      run: |
-        ls -l /github/home/meme/bin
+    # - name: Create directory and symlink
+    #   run: |
+    #     mkdir -p /github/home/meme
+    #     ln -s /meme/bin /github/home/meme/bin
+    # - name: Verify symbolic link
+    #   run: |
+    #     ls -l /github/home/meme/bin
+    - name: Set MEME_BIN environment variable
+      run: echo "MEME_BIN=/meme/bin" >> $GITHUB_ENV
+    - name: Check MEME_BIN
+      run: echo $MEME_BIN
     - uses: neurogenomics/rworkflows@master
       with:
         run_bioccheck: ${{ false }}

inst/extdata/rep1_peaks.narrowPeak

@@ -0,0 +1,71 @@
+chr22	12801618	12801818	rep1_peak_1	13	.	2.77778	4.09489	1.31287	37
+chr22	15747931	15748131	rep1_peak_2	27	.	3.7037	5.79561	2.77596	113
+chr22	16819196	16819413	rep1_peak_3	39	.	5	7.12547	3.97597	116
+chr22	16825330	16825538	rep1_peak_4	48	.	5.64516	8.132	4.88035	38
+chr22	16917462	16917725	rep1_peak_5	32	.	4.86111	6.36494	3.29337	133
+chr22	17037369	17037715	rep1_peak_6	24	.	4.28571	5.39333	2.41384	113
+chr22	17075121	17075339	rep1_peak_7	56	.	5.94059	8.98485	5.65104	66
+chr22	17084584	17084831	rep1_peak_8	73	.	6.02837	10.8743	7.38313	87
+chr22	17085699	17085899	rep1_peak_9	34	.	4.41176	6.54004	3.44888	70
+chr22	17102321	17102521	rep1_peak_10	42	.	4.01786	7.48244	4.29405	148
+chr22	17106724	17107204	rep1_peak_11	59	.	5.12048	9.28589	5.93969	287
+chr22	17155188	17155471	rep1_peak_12	85	.	5.89888	12.1937	8.59371	144
+chr22	17158836	17159082	rep1_peak_13	24	.	3.59116	5.40567	2.42525	53
+chr22	17171315	17172097	rep1_peak_14	176	.	9.00621	21.8331	17.6547	193
+chr22	17219065	17219425	rep1_peak_15	59	.	5.29801	9.25776	5.91358	280
+chr22	17228663	17229175	rep1_peak_16	81	.	6.77966	11.7386	8.16981	157
+chr22	17237003	17237293	rep1_peak_17	43	.	4.34783	7.56068	4.36927	177
+chr22	17242040	17242516	rep1_peak_18	219	.	7.70609	26.3054	21.9488	199
+chr22	17243361	17243712	rep1_peak_19	185	.	7.30769	22.8098	18.5979	175
+chr22	17281615	17281859	rep1_peak_20	64	.	6.62651	9.84835	6.43986	194
+chr22	17303962	17304224	rep1_peak_21	13	.	3.57143	4.18879	1.39266	178
+chr22	17334121	17334349	rep1_peak_22	48	.	5.35714	8.0546	4.80677	108
+chr22	17339115	17339338	rep1_peak_23	49	.	5.28455	8.24431	4.98673	65
+chr22	17359468	17359977	rep1_peak_24	126	.	8.62069	16.5198	12.6179	162
+chr22	17436454	17436873	rep1_peak_25	101	.	8.33333	13.8954	10.1616	235
+chr22	17477423	17477774	rep1_peak_26	55	.	6.17284	8.88004	5.55656	174
+chr22	17496921	17497255	rep1_peak_27	62	.	5.9322	9.62049	6.23222	148
+chr22	17498230	17498609	rep1_peak_28	81	.	6.77966	11.7386	8.16981	188
+chr22	17529042	17529444	rep1_peak_29	51	.	6	8.46401	5.17927	280
+chr22	17571404	17571604	rep1_peak_30	38	.	5.05051	7.03292	3.8914	48
+chr22	17615618	17615818	rep1_peak_31	48	.	5.7971	8.11363	4.86418	111
+chr22	17628780	17629351	rep1_peak_32	321	.	10.241	37.2906	32.1753	210
+chr22	17638429	17639331	rep1_peak_33	133	.	6.17761	17.2993	13.3629	268
+chr22	17647998	17648372	rep1_peak_34	51	.	5.60748	8.453	5.17242	238
+chr22	17673103	17673481	rep1_peak_35	60	.	6.18557	9.37863	6.01847	154
+chr22	17706423	17706712	rep1_peak_36	73	.	7.05882	10.8192	7.32884	151
+chr22	17760043	17760782	rep1_peak_37	151	.	8.68056	19.1207	15.107	573
+chr22	17777098	17777796	rep1_peak_38	82	.	5.52764	11.8523	8.27779	313
+chr22	17797922	17798539	rep1_peak_39	319	.	13.141	37.0429	31.9947	345
+chr22	17830191	17830391	rep1_peak_40	51	.	6	8.46401	5.17927	114
+chr22	17910598	17911579	rep1_peak_41	180	.	8.37696	22.1982	18.002	706
+chr22	17956696	17956933	rep1_peak_42	45	.	5.6338	7.78128	4.55668	115
+chr22	17974787	17975273	rep1_peak_43	87	.	6.91057	12.3546	8.7434	320
+chr22	18001594	18002062	rep1_peak_44	102	.	8.16327	13.996	10.2571	355
+chr22	18057543	18057973	rep1_peak_45	165	.	8.3815	20.6407	16.5389	187
+chr22	18077698	18078062	rep1_peak_46	71	.	6.54206	10.6047	7.13885	125
+chr22	18096688	18097165	rep1_peak_47	107	.	8.25243	14.5549	10.7837	354
+chr22	18103902	18104363	rep1_peak_48	56	.	6.11111	8.98481	5.65104	398
+chr22	18149995	18150334	rep1_peak_49	70	.	6.70103	10.5218	7.06941	185
+chr22	18186137	18186428	rep1_peak_50	43	.	4.62963	7.59266	4.39776	111
+chr22	19085798	19086512	rep1_peak_51	39	.	4.95496	7.13489	3.98348	166
+chr22	19122341	19122755	rep1_peak_52	72	.	6.15385	10.7069	7.22397	175
+chr22	19144424	19145057	rep1_peak_53	344	.	10.3321	40.5928	34.423	327
+chr22	19171243	19171860	rep1_peak_54	130	.	7.48503	16.9357	13.0158	230
+chr22	19179625	19179825	rep1_peak_55	64	.	6.08696	9.87065	6.45982	77
+chr22	19292025	19292515	rep1_peak_56	77	.	6.50407	11.2863	7.76353	251
+chr22	19419091	19419291	rep1_peak_57	49	.	5.45455	8.20957	4.95344	127
+chr22	19432295	19432747	rep1_peak_58	228	.	8.69565	27.1832	22.8059	253
+chr22	19447704	19448042	rep1_peak_59	85	.	6.33333	12.1886	8.59199	150
+chr22	19478826	19479935	rep1_peak_60	155	.	7.38095	19.5995	15.568	792
+chr22	19717932	19718132	rep1_peak_61	44	.	5.17241	7.69209	4.47546	127
+chr22	19780414	19780742	rep1_peak_62	57	.	6.17978	9.09783	5.76045	154
+chr22	19832804	19833004	rep1_peak_63	42	.	5.38462	7.47634	4.28946	60
+chr22	19844411	19844793	rep1_peak_64	92	.	7.47664	12.8752	9.23143	191
+chr22	19854759	19855223	rep1_peak_65	87	.	6.41892	12.3389	8.73115	283
+chr22	19855829	19856037	rep1_peak_66	43	.	4.66667	7.53305	4.34255	111
+chr22	19865190	19865531	rep1_peak_67	31	.	4.79452	6.23736	3.17348	193
+chr22	19886936	19887455	rep1_peak_68	351	.	13.1016	42.4999	35.1988	253
+chr22	19909765	19909965	rep1_peak_69	32	.	4.81928	6.30299	3.23356	154
+chr22	19942588	19942788	rep1_peak_70	37	.	4.65116	6.92693	3.79434	85
+chr22	19947409	19948021	rep1_peak_71	314	.	11.828	36.4578	31.4192	414