Update documentation.

neurogenomics · May 9, 2024 · 2d66a5d · 2d66a5d
1 parent 91bb8d1
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Showing 3 changed files with 2 additions and 59 deletions.
diff --git a/R/creb_peaks.R b/R/creb_peaks.R
diff --git a/R/motif_enrichment.R b/R/motif_enrichment.R
@@ -5,6 +5,7 @@
 #' \link{memes}.
 #'
 #' @importFrom memes runAme
+#' @importFrom utils read.table
 #' @import GenomicRanges
 #'
 #' @param peak_input Either a path to the narrowPeak file or a GRanges peak
@@ -55,7 +56,7 @@ motif_enrichment <- function(peak_input,
                            outdir = out_dir)
 
   seq_path <- file.path(out_dir, "sequences.tsv")
-  seq <- read.table(seq_path, header = TRUE)
+  seq <- utils::read.table(seq_path, header = TRUE)
   cleaned_ids <- seq$seq_ID[!grepl("_shuf_1", seq$seq_ID)]
 
   return(

diff --git a/man/creb_peaks.Rd b/man/creb_peaks.Rd