Setup package infrastructure

.Rbuildignore

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+^LICENSE\.md$

.github/workflows/rworkflows.yml

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+name: rworkflows
+'on':
+  push:
+    branches:
+    - master
+    - main
+    - devel
+    - RELEASE_**
+  pull_request:
+    branches:
+    - master
+    - main
+    - devel
+    - RELEASE_**
+jobs:
+  rworkflows:
+    permissions: write-all
+    runs-on: ${{ matrix.config.os }}
+    name: ${{ matrix.config.os }} (${{ matrix.config.r }})
+    container: ${{ matrix.config.cont }}
+    strategy:
+      fail-fast: ${{ false }}
+      matrix:
+        config:
+        - os: ubuntu-latest
+          bioc: devel
+          r: auto
+          cont: ghcr.io/bioconductor/bioconductor_docker:devel
+          rspm: ~
+        - os: macOS-latest
+          bioc: release
+          r: auto
+          cont: ~
+          rspm: ~
+        - os: windows-latest
+          bioc: release
+          r: auto
+          cont: ~
+          rspm: ~
+    steps:
+    - uses: neurogenomics/rworkflows@master
+      with:
+        run_bioccheck: ${{ false }}
+        run_rcmdcheck: ${{ true }}
+        as_cran: ${{ true }}
+        run_vignettes: ${{ true }}
+        has_testthat: ${{ true }}
+        run_covr: ${{ true }}
+        run_pkgdown: ${{ true }}
+        has_runit: ${{ false }}
+        has_latex: ${{ false }}
+        GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+        run_docker: ${{ false }}
+        DOCKER_TOKEN: ${{ secrets.DOCKER_TOKEN }}
+        runner_os: ${{ runner.os }}
+        cache_version: cache-v1
+        docker_registry: ghcr.io

.gitignore

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+.Rproj.user
+.Rhistory
+.RData
+.Ruserdata

DESCRIPTION

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+Package: MotifStats
+Title: Uncover the relationship between peaks and motifs
+Version: 0.0.0.9000
+Authors@R: 
+  person(given = "Thomas", family = "Roberts", 
+	email = "tomroberts.work15@gmail.com", 
+	role = c("aut", "cre"),
+	comment = c(ORCID = "0009-0006-6244-8670"))
+Description: What the package does (one paragraph).
+License: GPL (>= 3)
+Encoding: UTF-8
+LazyData: true
+Depends: 
+  R (>= 4.2.0)
+Imports:
+  rtracklayer
+Suggests: 
+  knitr,
+  rmarkdown,
+  rworkflows,
+  testthat (>= 3.0.0),
+  withr
+RoxygenNote: 7.3.1

MotifStats.Rproj

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+Version: 1.0
+
+RestoreWorkspace: Default
+SaveWorkspace: Default
+AlwaysSaveHistory: Default
+
+EnableCodeIndexing: Yes
+UseSpacesForTab: Yes
+NumSpacesForTab: 2
+Encoding: UTF-8
+
+RnwWeave: Sweave
+LaTeX: pdfLaTeX
+
+AutoAppendNewline: Yes
+StripTrailingWhitespace: Yes

NAMESPACE

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+# Generated by roxygen2: do not edit by hand
+

tests/testthat.R

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+# This file is part of the standard setup for testthat.
+# It is recommended that you do not modify it.
+#
+# Where should you do additional test configuration?
+# Learn more about the roles of various files in:
+# * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
+# * https://testthat.r-lib.org/articles/special-files.html
+
+library(testthat)
+library(MotifStats)
+
+test_check("MotifStats")

tests/testthat/test-peak_proportion.R

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+test_that("multiplication works", {
+  expect_equal(2 * 2, 4)
+})