MC-DuplexFold (mcdf) v 1.1
Copyright 2025 Simon Chasles simon.chasles@umontreal.ca
For basic compilation: gcc -o mcdf -fopenmp mcduplexfold.c -lm
For basic execution: ./mcdf -s {first RNA sequence} -t {second RNA sequence}
Sirt-1:miR34a example: ./mcdf -s ACACCCAGCUAGGACCAUUACUGCCA -t UGGCAGUGUCUUAGCUGGUUGU -p 1
Sirt-1:miR34a example: ./mcdf -s ACACCCAGCUAGGACCAUUACUGCCA -t UGGCAGUGUCUUAGCUGGUUGU -f 5
HNF4a:mir34a example: ./mcdf -s aacauggccuaagggccacaucccacugcca -t UGGCAGUGUCUUAGCUGGUUGU -p 1
For help: ./mcdf -h
Note: mcff must be executable in the current directory.