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  1. Nanostring-Biostats/SpatialDecon Nanostring-Biostats/SpatialDecon Public

    The SpatialDecon library implements the SpatialDecon algorithm for mixed cell deconvolution in spatial gene expression datasets. (This algorithm also works in bulk expression profiling data.)

    R 36 9

  2. Nanostring-Biostats/CellProfileLibrary Nanostring-Biostats/CellProfileLibrary Public

    30 14

  3. Nanostring-Biostats/CosMx-Analysis-Scratch-Space Nanostring-Biostats/CosMx-Analysis-Scratch-Space Public

    This repository is an exploratory resource to accelerate opensource analysis of CosMx® Spatial Molecular Imager (SMI) data. Contained here are and writeups and vignettes addressing a variety of top…

    HTML 56 5

  4. Nanostring-Biostats/FastReseg Nanostring-Biostats/FastReseg Public

    FastReseg for detection and correction of cell segmentation error based on spatial profile of transcripts.

    HTML 8 1