Refactor

[sofia-calgaro]

Previous structure was problematic for building documentation, import of modules was too messy and there were a lot of cyclic calls between modules

[codecov]

Codecov Report

Attention: Patch coverage is 40.65421% with 127 lines in your changes missing coverage. Please review.

Project coverage is 38.22%. Comparing base (08aedd6) to head (f845b83).
Report is 10 commits behind head on main.

Files with missing lines	Patch %	Lines
src/analysis.jl	0.00%	85 Missing ⚠️
src/likelihood.jl	70.66%	22 Missing ⚠️
src/utils.jl	65.71%	12 Missing ⚠️
src/plotting.jl	57.89%	8 Missing ⚠️

Additional details and impacted files

@@           Coverage Diff           @@
##             main      #74   +/-   ##
=======================================
  Coverage   38.22%   38.22%           
=======================================
  Files           5        6    +1     
  Lines         913      913           
=======================================
  Hits          349      349           
  Misses        564      564           

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