Bug/colab install

.github/workflows/python-package.yml

@@ -15,15 +15,21 @@ jobs:
     runs-on: ubuntu-latest
     strategy:
       matrix:
-        python-version: ['3.10']
+        python-version: ['3.9']
 
     steps:
     - uses: actions/checkout@v3
     - name: Set up Python ${{ matrix.python-version }}
       uses: actions/setup-python@v4
       with:
         python-version: ${{ matrix.python-version }}
-
+    - id: cache-dependencies
+      name: Cache dependencies
+      uses: actions/cache@v2.1.7
+      with:
+        path: ${{ github.workspace }}/.venv
+        key: dependencies-${{ hashFiles('**/poetry.lock') }}
+        restore-keys: dependencies-
     - name: Install dependencies
       run: |
         python -m pip install --upgrade pip
@@ -37,7 +43,12 @@ jobs:
         flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
     - name: Test a minimal install
       run: |
-        pip install .
+        python -m pip install -U pip poetry
+        poetry --version
+        poetry check --no-interaction
+        poetry config virtualenvs.in-project true
+        poetry install --no-interaction
+        # pip install .
         python tests/test_minimal.py
     - name: Install APT and dependencies On Linux
       run: |

.gitignore

@@ -21,4 +21,7 @@ key.asc
 .~*
 VERSION*
 
+*.lock
+setup.py
+
 test/test_data/*.xlsx

pyproject.toml

@@ -0,0 +1,80 @@
+[tool.poetry]
+name = "welleng"
+version = "0.7.3"
+description = "A collection of Well Engineering tools"
+authors = ["Jonathan Corcutt <jonnycorcutt@gmail.com>"]
+license = "Apache-2.0"
+readme = "README.md"
+homepage = "https://github.com/jonnymaserati/welleng"
+repository = "https://github.com/python-poetry/poetry"
+documentation = "https://jonnymaserati.github.io/welleng/build/html/index.html"
+keywords = [
+    "well",
+    "trajectory",
+    "wellpath",
+    "wellbore",
+    "drilling",
+    "drill",
+    "error",
+    "separation",
+    "minimum curvature",
+    "iscwsa",
+    "owsg",
+    "well engineering",
+    "wells",
+    "drilling engineering",
+    "directional drilling",
+    "mwd",
+    "survey",
+    "covariance",
+    "digitalization",
+    "automation",
+    "volve",
+    "witsml",
+]
+classifiers = [
+    "Development Status :: 4 - Beta",
+    "License :: OSI Approved :: Apache Software License",
+    "Programming Language :: Python :: 3.9",
+    "Programming Language :: Python :: 3.10",
+    "Natural Language :: English",
+    "Topic :: Scientific/Engineering",
+]
+include = [
+    {path = "errors/*.yaml"},
+    {path = "errors/tool_codes/*.yaml"},
+    {path = "exchange/*.yaml"}
+]
+exclude = [
+    "tests/*.py"
+]
+
+[tool.poetry.dependencies]
+python = ">=3.9, <3.12"
+numpy = "^1.18"
+scipy = "^1.10.1"
+Pint = "^0.20.1"
+PyYAML = "^6.0"
+vtk = "^9.2.6"
+magnetic-field-calculator = {version="^1.0.2", optional=true}
+networkx = {version="^3.0", optional=true}
+openpyxl = {version="^3.1.2", optional=true}
+pandas = {version="^1.5.3", optional=true}
+tabulate = {version="^0.9.0", optional=true}
+trimesh = {version="^3.21.3", optional=true}
+utm = {version="^0.7.0", optional=true}
+vedo = {version="^2023.4.4", optional=true}
+python-fcl = {version="^0.7.0", optional=true}
+
+[tool.poetry.dev-dependencies]
+# numba = {version="^0.56.4", optional=true}
+
+[tool.poetry.extras]
+easy = ["magnetic-field-calculator", "networkx", "openpyxl", "pandas",
+    "tabulate", "trimesh", "utm", "vedo"]
+advanced = ["magnetic-field-calculator", "networkx", "openpyxl", "pandas",
+    "tabulate", "trimesh", "utm", "vedo", "python-fcl"]
+
+[build-system]
+requires = ["poetry-core>=1.0.0"]
+build-backend = "poetry.core.masonry.api"

welleng/survey.py

@@ -10,7 +10,8 @@
 from scipy.optimize import minimize
 from scipy.spatial.transform import Rotation as R
 
-from .version import __version__
+from .version import __version__ as VERSION
+
 from .utils import (
     MinCurve,
     get_nev,
@@ -1930,7 +1931,7 @@ def export_csv(
 
     author = kwargs.get('author', 'Jonny Corcutt')
     comments = [
-        f"welleng, version: {__version__}\n"
+        f"welleng, version: {VERSION}\n"
         f"author, {author}\n"
     ]
     comments.extend([

welleng/version.py

@@ -1 +1,3 @@
-__version__ = '0.7.3'
+import importlib.metadata
+
+__version__ = importlib.metadata.version('welleng')  # in case I missed one