In this repository, you find code and explanations to quantify the net community production (NCP) during a cyanobacteria bloom in the Baltic Sea through vertically resolved pCO~2~ measurements.
The outcome of this study was submitted to the Copernicus Journal **Biogeosciences** where it is handled as: bg-2021-40
The data set required to re-run the analysis is not included in the Github repository, but a copy of copy of the code together with all relevant data sets is available through Zenodo.org under doi: https://doi.org/10.5281/zenodo.4553314
General comments concerning the use of the scripts:
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the code in this project was structured with the
workflowrpackage. For general information about this package, please visit: [# For details please refer to: https://jdblischak.github.io/workflowr/articles/wflow-01-getting-started.html -
some commands to run the code are stored in
/code/Workflowr_project_managment.R -
plots:
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that are not included in the generated website, are saved to
/output/plots -
plots used in the accompanying paper are saved to
/output/plots/Figures_publication -
some diagnostics plots that are created in high numbers, such as all individual profiles, are produced in code chunks that are set to
eval=FALSE, ie they must be executed manually when running the code line by line
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Dr. Jens Daniel Müller