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feat: SJIP-1214 Refactor Cypress tests - Solve skip tests and split file tests #855

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Feb 28, 2025
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feat: SJIP-1214 Refactor Cypress tests - Solve skip tests and split file tests #855

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466e67f
feat: SJIP-1214 Adjust Cypress tests related to last ETL run
kstonge Feb 26, 2025
335ba68
feat: SJIP-1214 Refactor Cypress tests - Solve skip tests and split f…
kstonge Feb 21, 2025
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18 changes: 18 additions & 0 deletions cypress/e2e/CavaticaButton/PageDataExploration_1.cy.ts
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@@ -0,0 +1,18 @@
/// <reference types="cypress"/>
import '../../support/commands';

beforeEach(() => {
cy.login();
cy.visitDataExploration('datafiles', '?sharedFilterId=75272e84-9a2d-4e0b-b69e-fb9e5df63762');
cy.get('tr[data-row-key="HTP.ce770763-b904-4c66-8b08-c54dd4e7c7b5.rsem.isoforms.results.gz"] [type="checkbox"]').check({force: true});
cy.get('button[aria-label="Analyze in Cavatica"]').clickAndWait({force: true});
});

describe('Page Dashboard - Bouton Analyze in Cavatica (déconnecté)', () => {
it('Vérifier les informations affichées - Modal', () => {
cy.get('[class="ant-modal-confirm-body"]').contains('Connect to Cavatica').should('exist');
cy.get('[class="ant-modal-confirm-body"]').contains('In order to analyze your files you must first connect your Cavatica account. Once you are connected, you will be redirected back to this page.').should('exist');
cy.get('[class="ant-modal-confirm-btns"] button[class*="ant-btn-default"]').contains('Cancel').should('exist');
cy.get('[class="ant-modal-confirm-btns"] button[class*="ant-btn-primary"]').contains('Connect').should('exist');
});
});
76 changes: 30 additions & 46 deletions cypress/e2e/CavaticaButton/PageFile.cy.ts → ...avaticaButton/PageDataExploration_2.cy.ts
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Original file line number Diff line number Diff line change
Expand Up @@ -3,56 +3,40 @@ import '../../support/commands';

beforeEach(() => {
cy.login();
});

describe('Page Dashboard - Bouton Analyze in Cavatica (déconnecté)', () => {
beforeEach(() => {
cy.visitFileEntity('HTP.ce770763-b904-4c66-8b08-c54dd4e7c7b5.rsem.isoforms.results.gz');
cy.get('button[aria-label="Analyze in Cavatica"]').clickAndWait({force: true});
});
cy.intercept('GET', '**/cavatica/authenticated', {
statusCode: 200,
body: {
"authenticated": true,
"expiration": 1722180513
},
}).as('cavaticaAuthenticated');
cy.intercept('GET', '**/cavatica2/v2/projects', {
statusCode: 200,
body: {
"href": "https://cavatica-api.sbgenomics.com/v2/projects?offset=0&limit=50",
"items": [
{
"href": "https://cavatica-api.sbgenomics.com/v2/projects/mock/cypress-project",
"id": "mock/cypress-project",
"name": "Cypress-Project",
"category": "PRIVATE",
"created_by": "mock",
"created_on": "2024-07-05T00:00:00Z",
"modified_on": "2024-07-05T00:00:00Z"
}
],
"links": []
},
}).as('cavaticaProjects');

it('Vérifier les informations affichées - Modal', () => {
cy.get('[class="ant-modal-confirm-body"]').contains('Connect to Cavatica').should('exist');
cy.get('[class="ant-modal-confirm-body"]').contains('In order to analyze your files you must first connect your Cavatica account. Once you are connected, you will be redirected back to this page.').should('exist');
cy.get('[class="ant-modal-confirm-btns"] button[class*="ant-btn-default"]').contains('Cancel').should('exist');
cy.get('[class="ant-modal-confirm-btns"] button[class*="ant-btn-primary"]').contains('Connect').should('exist');
});
cy.visitDataExploration('datafiles', '?sharedFilterId=75272e84-9a2d-4e0b-b69e-fb9e5df63762');
cy.wait('@cavaticaAuthenticated');
cy.wait('@cavaticaProjects');
cy.get('tr[data-row-key="HTP.ce770763-b904-4c66-8b08-c54dd4e7c7b5.rsem.isoforms.results.gz"] [type="checkbox"]').check({force: true});
cy.get('button[aria-label="Analyze in Cavatica"]').clickAndWait({force: true});
});

describe('Page Dashboard - Bouton Analyze in Cavatica (connecté)', () => {
beforeEach(() => {
cy.intercept('GET', '**/cavatica/authenticated', {
statusCode: 200,
body: {
"authenticated": true,
"expiration": 1722180513
},
}).as('cavaticaAuthenticated');
cy.intercept('GET', '**/cavatica2/v2/projects', {
statusCode: 200,
body: {
"href": "https://cavatica-api.sbgenomics.com/v2/projects?offset=0&limit=50",
"items": [
{
"href": "https://cavatica-api.sbgenomics.com/v2/projects/mock/cypress-project",
"id": "mock/cypress-project",
"name": "Cypress-Project",
"category": "PRIVATE",
"created_by": "mock",
"created_on": "2024-07-05T00:00:00Z",
"modified_on": "2024-07-05T00:00:00Z"
}
],
"links": []
},
}).as('cavaticaProjects');

cy.visitFileEntity('HTP.ce770763-b904-4c66-8b08-c54dd4e7c7b5.rsem.isoforms.results.gz');
cy.wait('@cavaticaAuthenticated');
cy.wait('@cavaticaProjects');
cy.get('button[aria-label="Analyze in Cavatica"]').clickAndWait({force: true});
});

it('Vérifier les informations affichées - Modal', () => {
cy.get('[class="ant-modal-title"]').contains('Analyze in Cavatica').should('exist');
cy.get('[class="ant-modal-body"]').contains('Copy files to...').should('exist');
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17 changes: 17 additions & 0 deletions cypress/e2e/CavaticaButton/PageFile_1.cy.ts
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Original file line number Diff line number Diff line change
@@ -0,0 +1,17 @@
/// <reference types="cypress"/>
import '../../support/commands';

beforeEach(() => {
cy.login();
cy.visitFileEntity('HTP.ce770763-b904-4c66-8b08-c54dd4e7c7b5.rsem.isoforms.results.gz');
cy.get('button[aria-label="Analyze in Cavatica"]').clickAndWait({force: true});
});

describe('Page Dashboard - Bouton Analyze in Cavatica (déconnecté)', () => {
it('Vérifier les informations affichées - Modal', () => {
cy.get('[class="ant-modal-confirm-body"]').contains('Connect to Cavatica').should('exist');
cy.get('[class="ant-modal-confirm-body"]').contains('In order to analyze your files you must first connect your Cavatica account. Once you are connected, you will be redirected back to this page.').should('exist');
cy.get('[class="ant-modal-confirm-btns"] button[class*="ant-btn-default"]').contains('Cancel').should('exist');
cy.get('[class="ant-modal-confirm-btns"] button[class*="ant-btn-primary"]').contains('Connect').should('exist');
});
});
77 changes: 29 additions & 48 deletions .../CavaticaButton/PageDataExploration.cy.ts → cypress/e2e/CavaticaButton/PageFile_2.cy.ts
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Original file line number Diff line number Diff line change
Expand Up @@ -3,58 +3,39 @@ import '../../support/commands';

beforeEach(() => {
cy.login();
});

describe('Page Dashboard - Bouton Analyze in Cavatica (déconnecté)', () => {
beforeEach(() => {
cy.visitDataExploration('datafiles', '?sharedFilterId=75272e84-9a2d-4e0b-b69e-fb9e5df63762');
cy.get('tr[data-row-key="HTP.ce770763-b904-4c66-8b08-c54dd4e7c7b5.rsem.isoforms.results.gz"] [type="checkbox"]').check({force: true});
cy.get('button[aria-label="Analyze in Cavatica"]').clickAndWait({force: true});
});
cy.intercept('GET', '**/cavatica/authenticated', {
statusCode: 200,
body: {
"authenticated": true,
"expiration": 1722180513
},
}).as('cavaticaAuthenticated');
cy.intercept('GET', '**/cavatica2/v2/projects', {
statusCode: 200,
body: {
"href": "https://cavatica-api.sbgenomics.com/v2/projects?offset=0&limit=50",
"items": [
{
"href": "https://cavatica-api.sbgenomics.com/v2/projects/mock/cypress-project",
"id": "mock/cypress-project",
"name": "Cypress-Project",
"category": "PRIVATE",
"created_by": "mock",
"created_on": "2024-07-05T00:00:00Z",
"modified_on": "2024-07-05T00:00:00Z"
}
],
"links": []
},
}).as('cavaticaProjects');

it('Vérifier les informations affichées - Modal', () => {
cy.get('[class="ant-modal-confirm-body"]').contains('Connect to Cavatica').should('exist');
cy.get('[class="ant-modal-confirm-body"]').contains('In order to analyze your files you must first connect your Cavatica account. Once you are connected, you will be redirected back to this page.').should('exist');
cy.get('[class="ant-modal-confirm-btns"] button[class*="ant-btn-default"]').contains('Cancel').should('exist');
cy.get('[class="ant-modal-confirm-btns"] button[class*="ant-btn-primary"]').contains('Connect').should('exist');
});
cy.visitFileEntity('HTP.ce770763-b904-4c66-8b08-c54dd4e7c7b5.rsem.isoforms.results.gz');
cy.wait('@cavaticaAuthenticated');
cy.wait('@cavaticaProjects');
cy.get('button[aria-label="Analyze in Cavatica"]').clickAndWait({force: true});
});

describe('Page Dashboard - Bouton Analyze in Cavatica (connecté)', () => {
beforeEach(() => {
cy.intercept('GET', '**/cavatica/authenticated', {
statusCode: 200,
body: {
"authenticated": true,
"expiration": 1722180513
},
}).as('cavaticaAuthenticated');
cy.intercept('GET', '**/cavatica2/v2/projects', {
statusCode: 200,
body: {
"href": "https://cavatica-api.sbgenomics.com/v2/projects?offset=0&limit=50",
"items": [
{
"href": "https://cavatica-api.sbgenomics.com/v2/projects/mock/cypress-project",
"id": "mock/cypress-project",
"name": "Cypress-Project",
"category": "PRIVATE",
"created_by": "mock",
"created_on": "2024-07-05T00:00:00Z",
"modified_on": "2024-07-05T00:00:00Z"
}
],
"links": []
},
}).as('cavaticaProjects');

cy.visitDataExploration('datafiles', '?sharedFilterId=75272e84-9a2d-4e0b-b69e-fb9e5df63762');
cy.wait('@cavaticaAuthenticated');
cy.wait('@cavaticaProjects');
cy.get('tr[data-row-key="HTP.ce770763-b904-4c66-8b08-c54dd4e7c7b5.rsem.isoforms.results.gz"] [type="checkbox"]').check({force: true});
cy.get('button[aria-label="Analyze in Cavatica"]').clickAndWait({force: true});
});

it('Vérifier les informations affichées - Modal', () => {
cy.get('[class="ant-modal-title"]').contains('Analyze in Cavatica').should('exist');
cy.get('[class="ant-modal-body"]').contains('Copy files to...').should('exist');
Expand Down
5 changes: 1 addition & 4 deletions cypress/e2e/Colonnes/TableauBiospecimens.cy.ts
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Expand Up @@ -3,13 +3,10 @@ import '../../support/commands';

beforeEach(() => {
cy.login();
cy.visitDataExploration('biospecimens');
});

describe('Page Data Exploration (Biospecimens) - Colonnes du tableau', () => {
beforeEach(() => {
cy.visitDataExploration('biospecimens');
});

it('Valider l\'affichage (par défaut/optionnel) et l\'ordre des colonnes', () => {
cy.get('thead[class="ant-table-thead"]')
.find('th[class*="ant-table-cell"]').eq(1)
Expand Down
5 changes: 1 addition & 4 deletions cypress/e2e/Colonnes/TableauFiles.cy.ts
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Original file line number Diff line number Diff line change
Expand Up @@ -3,13 +3,10 @@ import '../../support/commands';

beforeEach(() => {
cy.login();
cy.visitDataExploration('datafiles');
});

describe('Page Data Exploration (Files) - Colonnes du tableau', () => {
beforeEach(() => {
cy.visitDataExploration('datafiles');
});

it('Valider l\'affichage (par défaut/optionnel) et l\'ordre des colonnes', () => {
cy.get('thead[class="ant-table-thead"]')
.find('th[class*="ant-table-cell"]').eq(1)
Expand Down
5 changes: 1 addition & 4 deletions cypress/e2e/Colonnes/TableauParticipants.cy.ts
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Expand Up @@ -3,13 +3,10 @@ import '../../support/commands';

beforeEach(() => {
cy.login();
cy.visitDataExploration('participants');
});

describe('Page Data Exploration (Participants) - Colonnes du tableau', () => {
beforeEach(() => {
cy.visitDataExploration('participants');
});

it('Valider l\'affichage (par défaut/optionnel) et l\'ordre des colonnes', () => {
cy.get('thead[class="ant-table-thead"]')
.find('th[class*="ant-table-cell"]').eq(1)
Expand Down
5 changes: 1 addition & 4 deletions cypress/e2e/Colonnes/TableauStudies.cy.ts
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Expand Up @@ -3,13 +3,10 @@ import '../../support/commands';

beforeEach(() => {
cy.login();
cy.visitStudiesPage();
});

describe('Page des études - Colonnes du tableau', () => {
beforeEach(() => {
cy.visitStudiesPage();
});

it('Valider l\'affichage (par défaut/optionnel) et l\'ordre des colonnes', () => {
cy.get('thead[class="ant-table-thead"]')
.find('th[class*="ant-table-cell"]').eq(0)
Expand Down
5 changes: 1 addition & 4 deletions cypress/e2e/Colonnes/TableauVariants.cy.ts
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Original file line number Diff line number Diff line change
Expand Up @@ -3,13 +3,10 @@ import '../../support/commands';

beforeEach(() => {
cy.login();
cy.visitVariantsPage();
});

describe('Page des variants - Colonnes du tableau', () => {
beforeEach(() => {
cy.visitVariantsPage();
});

it('Valider l\'affichage (par défaut/optionnel) et l\'ordre des colonnes', () => {
cy.get('thead[class="ant-table-thead"]')
.find('th[class*="ant-table-cell"]').eq(1)
Expand Down
7 changes: 2 additions & 5 deletions cypress/e2e/Colonnes/TableauxPageFile.cy.ts
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Original file line number Diff line number Diff line change
Expand Up @@ -3,14 +3,11 @@ import '../../support/commands';

beforeEach(() => {
cy.login();
cy.visitFileEntity('HTP.1730dafb-464b-4aa6-b2dc-35f729cbdb2d.CGP.filtered.deNovo.vep.vcf.gz');
cy.resetColumns('participant-sample');
});

describe('Page d\'un fichier - Colonnes du tableau Participants-Samples', () => {
beforeEach(() => {
cy.visitFileEntity('HTP.1730dafb-464b-4aa6-b2dc-35f729cbdb2d.CGP.filtered.deNovo.vep.vcf.gz');
cy.resetColumns('participant-sample');
});

it('Valider l\'affichage (par défaut/optionnel) et l\'ordre des colonnes', () => {
cy.get('[id="participant-sample"]')
.find('thead[class="ant-table-thead"]')
Expand Down
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