--output-file

ghga-de · Jun 21, 2024 · 7187c57 · 7187c57
1 parent 286faf0
commit 7187c57
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/modules/nf-core/modules/bcftools/sort/main.nf b/modules/nf-core/modules/bcftools/sort/main.nf
@@ -31,7 +31,7 @@ process BCFTOOLS_SORT {
     """
     bcftools \\
         sort \\
-        --output ${vcf_name}.sorted.${extension} \\
+        --output-file ${vcf_name}.sorted.${extension} \\
         --temp-dir . \\
         $args \\
         $vcf