Merge pull request #10 from fgrunewald/cli_fix

Update ff_map
fgrunewald · Jan 7, 2022 · e3d25f8 · e3d25f8
2 parents ed4dd2a + b34acc6
commit e3d25f8
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/bin/ff_map b/bin/ff_map
@@ -54,8 +54,8 @@ def main():
     mapping_group = parser.add_argument_group('Mapping Options')
     mapping_group.add_argument('-mode', dest='mode', required=False, type=str,
                                help='COG or COM mapping', default='COG')
-    mapping_group.add_argument('-pbc', dest='pbc_complete', required=False, type=bool,
-                               help='complete pbc with MDAnalysis; this is slow!', default=False)
+    mapping_group.add_argument('-pbc', action='store_true', required=False, dest='pbc_complete',
+                               help='complete pbc with MDAnalysis; this is slow!')
     mapping_group.add_argument('-mols', dest='mol_names', required=True, type=str, nargs='+',
                                help='names of molecules to consider when mapping as in the [moleculetypes] directive')
     args = parser.parse_args()