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- correct id attribute in examples, make it write out to custom file…
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…name if given
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@fbergmann
fbergmann committed Mar 26, 2019
1 parent 2e53560 commit 017067a
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Showing 59 changed files with 290 additions and 114 deletions.
7 changes: 5 additions & 2 deletions examples/c++/adh.cpp
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Original file line number Diff line number Diff line change
Expand Up @@ -19,7 +19,7 @@ int main(int argc, const char* argv[])
SbgnPort* port= NULL;

auto* map = doc->createMap();
map->setMetaId("map1");
map->setId("map1");
map->setLanguage("process description");

bbox = map->createBBox();
Expand Down Expand Up @@ -224,7 +224,10 @@ int main(int argc, const char* argv[])
point->setY(180);


writeSBGNToFile(doc, "out.sbgn");
std::string outfile = "out.sbgn";
if (argc > 1)
outfile = argv[1];
writeSBGNToFile(doc, outfile.c_str());

delete doc;

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8 changes: 5 additions & 3 deletions examples/c++/binary-no-outcome.cpp
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Original file line number Diff line number Diff line change
Expand Up @@ -19,7 +19,7 @@ int main(int argc, const char* argv[])
SbgnPort* port= NULL;

auto* map = doc->createMap();
map->setMetaId("map1");
map->setId("map1");
map->setLanguage("entity relationship");

glyph = map->createGlyph();
Expand Down Expand Up @@ -93,8 +93,10 @@ int main(int argc, const char* argv[])
point->setX(296);
point->setY(50);


writeSBGNToFile(doc, "out.sbgn");
std::string outfile = "out.sbgn";
if (argc > 1)
outfile = argv[1];
writeSBGNToFile(doc, outfile.c_str());

delete doc;

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7 changes: 5 additions & 2 deletions examples/c++/create_render_extension.cpp
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Original file line number Diff line number Diff line change
Expand Up @@ -9,7 +9,7 @@ int main(int argc, const char* argv[])
auto* doc = new SbgnDocument();

auto* map = doc->createMap();
map->setMetaId("map1");
map->setId("map1");
map->setLanguage("process description");

auto* glyph = map->createGlyph();
Expand Down Expand Up @@ -54,7 +54,10 @@ int main(int argc, const char* argv[])
map->setRenderInformation(renderInfo);
delete renderInfo;

writeSBGNToFile(doc, "out.sbgn");
std::string outfile = "out.sbgn";
if (argc > 1)
outfile = argv[1];
writeSBGNToFile(doc, outfile.c_str());

delete doc;

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7 changes: 5 additions & 2 deletions examples/c++/write_af_AF_Reference_Card.cpp
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Original file line number Diff line number Diff line change
Expand Up @@ -19,7 +19,7 @@ int main(int argc, const char* argv[])
SbgnPort* port= NULL;

auto* map = doc->createMap();
map->setMetaId("map1");
map->setId("map1");
map->setLanguage("activity flow");

glyph = map->createGlyph();
Expand Down Expand Up @@ -832,7 +832,10 @@ int main(int argc, const char* argv[])
point->setY(780);


writeSBGNToFile(doc, "out.sbgn");
std::string outfile = "out.sbgn";
if (argc > 1)
outfile = argv[1];
writeSBGNToFile(doc, outfile.c_str());

delete doc;

Expand Down
7 changes: 5 additions & 2 deletions examples/c++/write_af_activity-nodes.cpp
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Original file line number Diff line number Diff line change
Expand Up @@ -19,7 +19,7 @@ int main(int argc, const char* argv[])
SbgnPort* port= NULL;

auto* map = doc->createMap();
map->setMetaId("map1");
map->setId("map1");
map->setLanguage("activity flow");

glyph = map->createGlyph();
Expand Down Expand Up @@ -126,7 +126,10 @@ int main(int argc, const char* argv[])
point->setY(450);


writeSBGNToFile(doc, "out.sbgn");
std::string outfile = "out.sbgn";
if (argc > 1)
outfile = argv[1];
writeSBGNToFile(doc, outfile.c_str());

delete doc;

Expand Down
7 changes: 5 additions & 2 deletions examples/c++/write_af_auxiliary-units.cpp
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Original file line number Diff line number Diff line change
Expand Up @@ -19,7 +19,7 @@ int main(int argc, const char* argv[])
SbgnPort* port= NULL;

auto* map = doc->createMap();
map->setMetaId("map1");
map->setId("map1");
map->setLanguage("activity flow");

glyph = map->createGlyph();
Expand Down Expand Up @@ -181,7 +181,10 @@ int main(int argc, const char* argv[])
entity->setName("perturbation");


writeSBGNToFile(doc, "out.sbgn");
std::string outfile = "out.sbgn";
if (argc > 1)
outfile = argv[1];
writeSBGNToFile(doc, outfile.c_str());

delete doc;

Expand Down
7 changes: 5 additions & 2 deletions examples/c++/write_af_compartment.cpp
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Original file line number Diff line number Diff line change
Expand Up @@ -19,7 +19,7 @@ int main(int argc, const char* argv[])
SbgnPort* port= NULL;

auto* map = doc->createMap();
map->setMetaId("map1");
map->setId("map1");
map->setLanguage("activity flow");

glyph = map->createGlyph();
Expand Down Expand Up @@ -152,7 +152,10 @@ int main(int argc, const char* argv[])
point->setY(210);


writeSBGNToFile(doc, "out.sbgn");
std::string outfile = "out.sbgn";
if (argc > 1)
outfile = argv[1];
writeSBGNToFile(doc, outfile.c_str());

delete doc;

Expand Down
7 changes: 5 additions & 2 deletions examples/c++/write_af_delay.cpp
View file
Original file line number Diff line number Diff line change
Expand Up @@ -19,7 +19,7 @@ int main(int argc, const char* argv[])
SbgnPort* port= NULL;

auto* map = doc->createMap();
map->setMetaId("map1");
map->setId("map1");
map->setLanguage("activity flow");

glyph = map->createGlyph();
Expand Down Expand Up @@ -102,7 +102,10 @@ int main(int argc, const char* argv[])
point->setY(70);


writeSBGNToFile(doc, "out.sbgn");
std::string outfile = "out.sbgn";
if (argc > 1)
outfile = argv[1];
writeSBGNToFile(doc, outfile.c_str());

delete doc;

Expand Down
7 changes: 5 additions & 2 deletions examples/c++/write_af_modulation.cpp
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Original file line number Diff line number Diff line change
Expand Up @@ -19,7 +19,7 @@ int main(int argc, const char* argv[])
SbgnPort* port= NULL;

auto* map = doc->createMap();
map->setMetaId("map1");
map->setId("map1");
map->setLanguage("activity flow");

glyph = map->createGlyph();
Expand Down Expand Up @@ -65,7 +65,10 @@ int main(int argc, const char* argv[])
point->setY(130);


writeSBGNToFile(doc, "out.sbgn");
std::string outfile = "out.sbgn";
if (argc > 1)
outfile = argv[1];
writeSBGNToFile(doc, outfile.c_str());

delete doc;

Expand Down
7 changes: 5 additions & 2 deletions examples/c++/write_af_submap.cpp
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Original file line number Diff line number Diff line change
Expand Up @@ -19,7 +19,7 @@ int main(int argc, const char* argv[])
SbgnPort* port= NULL;

auto* map = doc->createMap();
map->setMetaId("map1");
map->setId("map1");
map->setLanguage("activity flow");

glyph = map->createGlyph();
Expand Down Expand Up @@ -295,7 +295,10 @@ int main(int argc, const char* argv[])
point->setY(350);


writeSBGNToFile(doc, "out.sbgn");
std::string outfile = "out.sbgn";
if (argc > 1)
outfile = argv[1];
writeSBGNToFile(doc, outfile.c_str());

delete doc;

Expand Down
5 changes: 4 additions & 1 deletion examples/c++/write_af_submap_expanded.cpp
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Original file line number Diff line number Diff line change
Expand Up @@ -352,7 +352,10 @@ int main(int argc, const char* argv[])
point->setY(300);


writeSBGNToFile(doc, "out.sbgn");
std::string outfile = "out.sbgn";
if (argc > 1)
outfile = argv[1];
writeSBGNToFile(doc, outfile.c_str());

delete doc;

Expand Down
5 changes: 4 additions & 1 deletion examples/c++/write_af_submaps_all-in-one.cpp
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Original file line number Diff line number Diff line change
Expand Up @@ -352,7 +352,10 @@ int main(int argc, const char* argv[])
point->setY(300);


writeSBGNToFile(doc, "out.sbgn");
std::string outfile = "out.sbgn";
if (argc > 1)
outfile = argv[1];
writeSBGNToFile(doc, outfile.c_str());

delete doc;

Expand Down
7 changes: 5 additions & 2 deletions examples/c++/write_af_two_edges_between_two_activities.cpp
View file
Original file line number Diff line number Diff line change
Expand Up @@ -19,7 +19,7 @@ int main(int argc, const char* argv[])
SbgnPort* port= NULL;

auto* map = doc->createMap();
map->setMetaId("map1");
map->setId("map1");
map->setLanguage("activity flow");

glyph = map->createGlyph();
Expand Down Expand Up @@ -162,7 +162,10 @@ int main(int argc, const char* argv[])
point->setY(230);


writeSBGNToFile(doc, "out.sbgn");
std::string outfile = "out.sbgn";
if (argc > 1)
outfile = argv[1];
writeSBGNToFile(doc, outfile.c_str());

delete doc;

Expand Down
7 changes: 5 additions & 2 deletions examples/c++/write_er_ER_Reference_Card.cpp
View file
Original file line number Diff line number Diff line change
Expand Up @@ -19,7 +19,7 @@ int main(int argc, const char* argv[])
SbgnPort* port= NULL;

auto* map = doc->createMap();
map->setMetaId("map1");
map->setId("map1");
map->setLanguage("entity relationship");

glyph = map->createGlyph();
Expand Down Expand Up @@ -731,7 +731,10 @@ int main(int argc, const char* argv[])
bbox->setHeight(17.5);


writeSBGNToFile(doc, "out.sbgn");
std::string outfile = "out.sbgn";
if (argc > 1)
outfile = argv[1];
writeSBGNToFile(doc, outfile.c_str());

delete doc;

Expand Down
7 changes: 5 additions & 2 deletions examples/c++/write_er_binary-no-outcome.cpp
View file
Original file line number Diff line number Diff line change
Expand Up @@ -19,7 +19,7 @@ int main(int argc, const char* argv[])
SbgnPort* port= NULL;

auto* map = doc->createMap();
map->setMetaId("map1");
map->setId("map1");
map->setLanguage("entity relationship");

glyph = map->createGlyph();
Expand Down Expand Up @@ -94,7 +94,10 @@ int main(int argc, const char* argv[])
point->setY(50);


writeSBGNToFile(doc, "out.sbgn");
std::string outfile = "out.sbgn";
if (argc > 1)
outfile = argv[1];
writeSBGNToFile(doc, outfile.c_str());

delete doc;

Expand Down
7 changes: 5 additions & 2 deletions examples/c++/write_er_binary-with-perturbation-and-phenotype.cpp
View file
Original file line number Diff line number Diff line change
Expand Up @@ -19,7 +19,7 @@ int main(int argc, const char* argv[])
SbgnPort* port= NULL;

auto* map = doc->createMap();
map->setMetaId("map1");
map->setId("map1");
map->setLanguage("entity relationship");

glyph = map->createGlyph();
Expand Down Expand Up @@ -138,7 +138,10 @@ int main(int argc, const char* argv[])
point->setY(190);


writeSBGNToFile(doc, "out.sbgn");
std::string outfile = "out.sbgn";
if (argc > 1)
outfile = argv[1];
writeSBGNToFile(doc, outfile.c_str());

delete doc;

Expand Down
7 changes: 5 additions & 2 deletions examples/c++/write_er_cis.cpp
View file
Original file line number Diff line number Diff line change
Expand Up @@ -19,7 +19,7 @@ int main(int argc, const char* argv[])
SbgnPort* port= NULL;

auto* map = doc->createMap();
map->setMetaId("map1");
map->setId("map1");
map->setLanguage("entity relationship");

glyph = map->createGlyph();
Expand Down Expand Up @@ -98,7 +98,10 @@ int main(int argc, const char* argv[])
bbox->setHeight(18);


writeSBGNToFile(doc, "out.sbgn");
std::string outfile = "out.sbgn";
if (argc > 1)
outfile = argv[1];
writeSBGNToFile(doc, outfile.c_str());

delete doc;

Expand Down
7 changes: 5 additions & 2 deletions examples/c++/write_er_delay.cpp
View file
Original file line number Diff line number Diff line change
Expand Up @@ -19,7 +19,7 @@ int main(int argc, const char* argv[])
SbgnPort* port= NULL;

auto* map = doc->createMap();
map->setMetaId("map1");
map->setId("map1");
map->setLanguage("entity relationship");

glyph = map->createGlyph();
Expand Down Expand Up @@ -172,7 +172,10 @@ int main(int argc, const char* argv[])
point->setY(120);


writeSBGNToFile(doc, "out.sbgn");
std::string outfile = "out.sbgn";
if (argc > 1)
outfile = argv[1];
writeSBGNToFile(doc, outfile.c_str());

delete doc;

Expand Down
7 changes: 5 additions & 2 deletions examples/c++/write_er_existence_variable.cpp
View file
Original file line number Diff line number Diff line change
Expand Up @@ -19,7 +19,7 @@ int main(int argc, const char* argv[])
SbgnPort* port= NULL;

auto* map = doc->createMap();
map->setMetaId("map1");
map->setId("map1");
map->setLanguage("entity relationship");

glyph = map->createGlyph();
Expand Down Expand Up @@ -88,7 +88,10 @@ int main(int argc, const char* argv[])
point->setY(110);


writeSBGNToFile(doc, "out.sbgn");
std::string outfile = "out.sbgn";
if (argc > 1)
outfile = argv[1];
writeSBGNToFile(doc, outfile.c_str());

delete doc;

Expand Down
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