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74 Open 266 Closed
74 Open 266 Closed
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Issues list

How to handle long branches (fresh and degraded samples) and low UCE capture
#367 opened Feb 19, 2025 by jbernst
Issue with RAM
#366 opened Feb 6, 2025 by jb23590
3
assembly_assemblo_spades: how to including several singletons fastq files?
#363 opened Jan 17, 2025 by Angelica-Pulido
4
Error running phyluce_ncbi_prep_uce_align_files_for_ncbi_targeted_locus_db
#362 opened Jan 9, 2025 by tomgiarla
3
phyluce_assembly_assemblo_spades failing for some sequences
#361 opened Jan 9, 2025 by antnette
1
UCE names do not match error in uce-tutorial when using abyss assembler
#359 opened Dec 15, 2024 by mlosada323
2
phyluce_assembly_assemblo_spades gives errors when running uce-tutorial
#358 opened Dec 12, 2024 by mlosada323
3
"Cannot find the a fasta file" error
#357 opened Dec 11, 2024 by franztastic
1
How much sequencing data do I need?
#356 opened Nov 28, 2024 by BrigidaGallone
2
Grouping phased fasta files for phyluce_assembly_match_contigs_to_probes
#355 opened Nov 26, 2024 by rhyacotritonriot
Using the by-locus function when exploding monolithic fasta
#354 opened Nov 6, 2024 by amateos1998
1
Samples with multiple lane reads
#351 opened Oct 28, 2024 by jb23590
3
AttributeError: 'NoneType' object has no attribute 'groups'
#350 opened Sep 25, 2024 by Genomics-Bhuwan
3
copy_and_build_index error in phyluce mapping
#349 opened Sep 16, 2024 by kmontana13
How to get joined_allele_sequences_all_samples.fasta
#345 opened Jul 16, 2024 by emmajochim
4
phyluce_assembly_assemblo_spades [contig length issue]
#344 opened Jul 11, 2024 by kimchafer
4
phyluce installation error at the conda env update --name phyluce-1.7.3-x86 ... stage
#343 opened Jun 29, 2024 by kwinker
6
Adding SRR outgroups to the Phyluce pipeline
#342 opened Jun 19, 2024 by bbessesen
20
phyluce_probe_run_multiple_lastzs_sqlite issue
#340 opened May 23, 2024 by jovana03
1
phyluce_probe_run_multiple_lastzs_sqlite --probefile
#338 opened Apr 23, 2024 by Jami5on
1
phyluce_assembly_match_contigs_to_barcodes, OSError: lastz: b'Can\'t understand "/Users/rodolfoprobst/Library/CloudStorage/Box-Box/Myrmelachista_all"\n(my guess) perhaps you have too many sequence files in the command\n
#335 opened Apr 8, 2024 by probstrodolfo
phyluce_assembly_get_match_counts, possible config issue
#334 opened Apr 3, 2024 by bbessesen
9
WARNING - Did not clean all fastq/fasta files
#333 opened Apr 1, 2024 by bbessesen
5
ConfigParser.NoSectionError: No section: 'names'
#332 opened Mar 17, 2024 by Jami5on
3
sqlite error in "Determining locus presence in multiple genomes" step of Tutorial IV
#329 opened Mar 1, 2024 by kautumn
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