Itch

Template R code for bioinformatics analysis pipelines used in the Tmem184b paper published in Pain

Markdown files encompass the analysis of various Illumina (paired-end and single-end) bulk RNAseq experiments

Source code has been revised since their original publications to facilitate better readability and reproducibility

• includes standard, high-level bioinformatics/transcriptomics visualizations, including:

  • volcano plots
  • MA plots
  • heatmaps

• includes higher-level analyses on subsets of the data:

  • gene ontology querying and statistical analysis
    • visualizations as bar plots

• includes wrangling and visualization of time-series fluorescence microscopy