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Demo! UNITE v9.0 for qiime2-2022.11

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@colinbrislawn colinbrislawn released this 01 Feb 20:14
· 50 commits to main since this release
9.0-qiime2-2022.11-demo
a13e209

⚠️ This is a public demo, and has not been validated. I am not affiliated with the UNITE team. Use at your own risk!

This is a classifier for version 9.0 of the UNITE database trained for use with Qiime2 2022.11. These can be used with q2-feature-classifier like those found on the Data resources page.

UNITE is licensed under CC BY-SA 4.0. If you use it, cite it! 🤝

Abarenkov, Kessy; Zirk, Allan; Piirmann, Timo; Pöhönen, Raivo; Ivanov, Filipp; Nilsson, R. Henrik; Kõljalg, Urmas (2022): UNITE QIIME release for Fungi. Version 16.10.2022. UNITE Community <DOI GOES HERE>

DOIs for specific releases are listed here: https://unite.ut.ee/repository.php

Changes:

  • Update UNITE to 9.0
  • Update Qiime2 to 2022.11
  • New file name convention: 
    unite_ver9_dynamic_s_29.11.2022-Q2-2022.11.qza
   db_
   version_
          distance_
          taxa scope_
                      file date-
                            Qiime2-version.qza

There are three levels of classification provided here:

  • "97", which is 97% identity between taxa
  • "99", which is 99% identity between taxa
  • "dynamic", which uses 97% to 99% identity between taxa, as individually recommended by experts in the field.

There are two taxa scopes:

  • "" Just Fungi
  • "all" All eukaryotes

There is also version with and without an "s":

  • "" Includes singletons set as RefS (in dynamic files).
  • "s" Includes global and 97% singletons.
  • (I'm still not sure what that means.)

Notes on dates:

On the main UNITE download page, Version numer 9.0 has a Release date of 2022-10-16.

However, that DOI leads to three, progressively newer files (webpage, api)

  • sh_qiime_release_16.10.2022.tgz
  • sh_qiime_release_27.10.2022.tgz
  • sh_qiime_release_29.11.2022.tgz

I've used the newest file (29.11.2022), which is why the file dates are newer than the release date.

All feedback is welcome! Please open an issue! ✅

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