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Address deprecation warnings in cogent3 #77

Merged
merged 4 commits into from
Mar 24, 2024
Merged

Address deprecation warnings in cogent3 #77

merged 4 commits into from
Mar 24, 2024

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GavinHuttley
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[CHANGED] just import ensembl_lite modules rather than individual
    functions, classes etc... Bit more flexible in terms
    of accessing new functions
[CHANGED] motivated by impending changes to AnnotationDb from cogent3, where
    classes now use stop as SLQ column names instead of end
[CHANGED] end is a keyword that is strictly enforced in many SQL dialects.
    cogent3 is moving to using stop in SQL tables rather than edn, so we have
    updated all comparable cases here
@GavinHuttley GavinHuttley merged commit 5b0518a into cogent3:develop Mar 24, 2024
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