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Peeling configuration

mdavy86 edited this page Oct 26, 2012 · 5 revisions

We need to copy the '''peeling''' binary into a suitable location in the search path variable $PATH (/usr/local/bin), and make sure that the permissions allow it to be executed by '''visg_user''';

## Original directory for the working copy of peeling
cd ~/Desktop/VISG\ Files/Rod/Packages/polyploids-standalone/src/
 
## Permissions
chmod 755 peeling 
## Password is visg_user
sudo cp peeling /usr/local/bin
 
## Sanity check to make sure it works type;
peeling

## First example
cd ~/Desktop/visg-course2012_Rod/blood-data/
peeling blood_m6_map.dat blood_n4m6.dat

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