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@cellgeni

Cellular Genetics Informatics

Wellcome Sanger Institute

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  1. STARsolo STARsolo Public

    wrapper scripts for convenient STARsolo processing of 10X and other scRNA-seq

    Shell 50 6

  2. reprocess_public_10x reprocess_public_10x Public

    Scripts to help get fastqs

    Shell 13 3

  3. c2l c2l Public

    Set of scripts to run cell2location on farm

    Jupyter Notebook 2

  4. nf-cellbender nf-cellbender Public

    Nextflow implementation of Cellbender

    R

  5. sceasy sceasy Public

    A package to help convert different single-cell data formats to each other

    R 409 61

  6. schard schard Public

    reticulate-free single cell format conversion

    R 124 8

Repositories

Showing 10 of 100 repositories
  • nf-cellbender Public

    Nextflow implementation of Cellbender

    cellgeni/nf-cellbender’s past year of commit activity
    R 0 MIT 0 0 0 Updated Feb 25, 2025
  • nf-atac Public

    Pipeline to process sc-ATAC data with pyCistopic

    cellgeni/nf-atac’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Feb 25, 2025
  • nf-metacells Public
    cellgeni/nf-metacells’s past year of commit activity
    Python 0 0 0 0 Updated Feb 21, 2025
  • nf-starsolo Public

    Our STARsolo repo but designed for Nextflow Tower

    cellgeni/nf-starsolo’s past year of commit activity
    Shell 0 GPL-3.0 0 0 0 Updated Feb 21, 2025
  • dockage Public

    Cellgeni Docker files

    cellgeni/dockage’s past year of commit activity
    Dockerfile 1 AGPL-3.0 0 0 0 Updated Feb 19, 2025
  • nf-scsajr Public

    single cell alternative splicing

    cellgeni/nf-scsajr’s past year of commit activity
    R 0 0 0 0 Updated Feb 18, 2025
  • reprocess_public_10x Public

    Scripts to help get fastqs

    cellgeni/reprocess_public_10x’s past year of commit activity
    Shell 13 GPL-3.0 3 0 0 Updated Feb 17, 2025
  • STARsolo Public

    wrapper scripts for convenient STARsolo processing of 10X and other scRNA-seq

    cellgeni/STARsolo’s past year of commit activity
    Shell 50 GPL-3.0 6 0 0 Updated Feb 14, 2025
  • OMERO_tools Public
    cellgeni/OMERO_tools’s past year of commit activity
    Python 0 0 0 0 Updated Feb 13, 2025
  • nf-fgwas Public

    Nextflow implementation of fGWAS

    cellgeni/nf-fgwas’s past year of commit activity
    C 4 BSD-3-Clause 0 0 0 Updated Feb 12, 2025
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