Fix pkgdown build on GitHub Actions for new Ubuntu 24.04 runners (#48) #182

	on:
	pull_request:
	push:
	branches: [main, master]

	name: test-coverage

	jobs:
	test-coverage:
	runs-on: ubuntu-latest

	# Required for OIDC access to S3
	permissions:
	id-token: write
	contents: read

	steps:
	- name: Checkout
	uses: actions/checkout@v4

	- name: Setup R
	uses: r-lib/actions/setup-r@v2
	with:
	use-public-rspm: true

	- name: Setup R dependencies
	uses: r-lib/actions/setup-r-dependencies@v2
	with:
	extra-packages: any::covr
	needs: coverage

	- name: Prepare PTAXSIM database
	id: prep_ptaxsim_db
	uses: ./.github/actions/prepare-ptaxsim
	with:
	ASSUMED_ROLE: ${{ secrets.AWS_IAM_ROLE_TO_ASSUME_ARN }}

	- name: Set PTAXSIM database path
	run: echo "PTAXSIM_DB_PATH=${{ steps.prep_ptaxsim_db.outputs.PTAXSIM_DB_DIR }}/ptaxsim.db" >> $GITHUB_ENV
	shell: bash

	- name: Test coverage
	run: \|
	covr::package_coverage(
	quiet = FALSE,
	clean = FALSE,
	install_path = file.path(Sys.getenv("RUNNER_TEMP"), "package")
	)
	shell: Rscript {0}

	- name: Show testthat output
	if: always()
	run: \|
	## --------------------------------------------------------------------
	find ${{ runner.temp }}/package -name 'testthat.Rout*' -exec cat '{}' \; \|\| true
	shell: bash

	- name: Upload test results
	if: failure()
	uses: actions/upload-artifact@v4
	with:
	name: coverage-test-failures
	path: ${{ runner.temp }}/package

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