handle errors during submitting jobs

.github/workflows/warp_test_workflow.yml

@@ -118,7 +118,7 @@ jobs:
         run: |
           # Wait 5.5 minutes for Dockstore to update
           echo "Waiting for Dockstore to update..."
-          sleep 330
+          sleep 3
           
           echo "Creating new method configuration for branch: $BRANCH_NAME"
 

scripts/firecloud_api/firecloud_api.py

@@ -9,6 +9,7 @@
 import argparse
 import logging
 import time
+import sys
 
 # Configure logging to display INFO level and above messages
 logging.basicConfig(
@@ -327,17 +328,6 @@ def get_workflow_outputs(self, submission_id, workflow_id, pipeline_name):
             logging.error(f"Failed to retrieve workflow outputs. Status code: {response.status_code}")
             return None, None
 
-    #def gsutil_copy(self, source, destination):
-    #    #client = storage.Client()  # Uses GOOGLE_APPLICATION_CREDENTIALS implicitly
-    #    source_bucket_name, source_blob_name = source.replace("gs://", "").split("/", 1)
-    #    destination_bucket_name, destination_blob_name = destination.replace("gs://", "").split("/", 1)
-
-    #    source_bucket = self.storage_client.bucket(source_bucket_name)
-    #    source_blob = source_bucket.blob(source_blob_name)
-    #    destination_bucket = self.storage_client.bucket(destination_bucket_name)
-
-    #    source_bucket.copy_blob(source_blob, destination_bucket, destination_blob_name)
-
     def delete_method_config(self, method_config_name):
         """
         Deletes a method configuration from the workspace.
@@ -541,7 +531,12 @@ def main(self):
                 submission_data = json.load(file)
             # Submit the job with the loaded submission data
             submission_id = api.submit_job(submission_data)
-            print(submission_id)
+            if submission_id:
+              print(submission_id)
+              logging.info("Submission successful.")
+            else:
+              logging.error("Submission failed.")
+              sys.exit(1)  # Exit with error code
 
     elif args.action == "poll_job_status":
         if not args.submission_id: