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Update README.md
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@ekiernan
ekiernan committed Jan 10, 2024
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Expand Up @@ -55,7 +55,8 @@ The following describes the inputs of the ATAC workflow. For more details on how
| whitelist | Whitelist file for ATAC cellular barcodes. |
| adapter_seq_read1 | TrimAdapters input: Sequence adapter for read 1 fastq. |
| adapter_seq_read3 | TrimAdapters input: Sequence adapter for read 3 fastq. |
| num_output_files | FastqProcessATAC input: Number of output fastq files. |
| num_output_files | FastqProcessATAC input: Number of output fastq files. |
| preindex | Boolean used for paired-tag data and not applicable to ATAC data types; default is set to false. |

## ATAC tasks and tools

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