Merge pull request #40 from broadinstitute/dp-scaffold

bugfix: assemble.skani_contigs_to_refs filtered file was missing header
broadinstitute · Mar 19, 2024 · 9c862b9 · 9c862b9
2 parents 96335ee + bd0c3c1
commit 9c862b9
Showing 1 changed file with 1 addition and 0 deletions.
diff --git a/assembly.py b/assembly.py
@@ -410,6 +410,7 @@ def skani_contigs_to_refs(inContigs, inRefs, out_skani_dist, out_skani_dist_filt
     with open(out_skani_dist, 'r') as inf:
         with open(out_skani_dist_filtered, 'w') as outf:
             writer = csv.DictWriter(outf, dist_header, delimiter='\t', dialect=csv.unix_dialect, quoting=csv.QUOTE_MINIMAL)
+            writer.writeheader()
             for row in csv.DictReader(inf, delimiter='\t'):
                 refs_hit.add(row['Ref_file'])
                 if row['Ref_file'] not in refs_hit_by_cluster: