Move learning_objective boiler plate to overview and feedback macros (#…

…927)

* Move learning_objective boiler plate to overview and feedback macros

* Move learning_objective boiler plate to overview and feedback macros

* Increment version

* Increment version

* increment revision number in modules

* Update docs.md

---------

Co-authored-by: drelliche <99294374+drelliche@users.noreply.github.com>

_module_templates/macros.md

@@ -2,7 +2,7 @@
 
 author:   DART Team
 email:    dart@chop.edu
-version:  1.4.0
+version:  1.4.1
 current_version_description: Add text after Overview and Feedback that invites learners to the rest of the modules
 language: en
 narrator: UK English Female
@@ -35,6 +35,8 @@ Previous versions:
 
 **Learning Objectives**
 
+After completion of this module, learners will be able to:
+
 @learning_objectives
 
 **Version History**
@@ -71,6 +73,8 @@ In the beginning, we stated some goals.
 
 **Learning Objectives:**
 
+After completion of this module, learners will be able to:
+
 @learning_objectives
 
 We ask you to fill out a brief (5 minutes or less) survey to let us know:

_module_templates/template_exercise.md

@@ -11,7 +11,6 @@ narrator: UK English Female
 mode: Textbook
 
 title: Module Title
-
 comment:  This is a short, focused description of the module.
 
 long_description: This is a longer description, which should be understandable for a lay audience.
@@ -23,7 +22,7 @@ List any skills or knowledge needed to complete this module here.
 @end
 
 @learning_objectives  
-After completion of this module, learners will be able to:
+
 
 - identify key elements
 - create a product

_module_templates/template_standard.md

@@ -23,7 +23,7 @@ List any skills or knowledge needed to complete this module here.
 @end
 
 @learning_objectives  
-After completion of this module, learners will be able to:
+
 
 - identify key elements
 - create a product

_module_templates/template_wrapper.md

@@ -23,7 +23,7 @@ List any skills or knowledge needed to complete this module here.
 @end
 
 @learning_objectives  
-After completion of this module, learners will be able to:
+
 
 - identify key elements
 - create a product

bash_103_combining_commands/bash_103_combining_commands.md

@@ -2,7 +2,7 @@
 module_id: bash_103_combining_commands
 author:   Elizabeth Drellich and Nicole Feldman
 email:    drelliche@chop.edu and feldmanna@chop.edu
-version: 1.4.4
+version: 1.4.5
 current_version_description: Added webinar links to additional resources; make liascript link(s) point to first page
 module_type: standard
 docs_version: 2.0.0
@@ -21,9 +21,6 @@ The only commands that will be assumed are the navigation commands `cd`, `ls`, a
 @end
 
 @learning_objectives
-
-After completion of this module, learners will be able to:
-
 - Use the commands `wc`, `head`, `tail`,`sort`, and `uniq`
 - Redirect output to a file using `>` and `>>`
 - Chain commands directly using the pipe `|`

bash_command_line_101/bash_command_line_101.md

@@ -2,7 +2,7 @@
 module_id: bash_command_line_101
 author:   Nicole Feldman and Elizabeth Drellich
 email:    feldmanna@chop.edu drelliche@chop.edu
-version: 1.5.6
+version: 1.5.7
 current_version_description: Updated metadata and macros; make liascript link(s) point to first page
 module_type: standard
 docs_version: 2.0.0
@@ -21,8 +21,6 @@ Learners should be familiar with [the command line interface](https://liascript.
 @end
 
 @learning_objectives
-After completion of this module, learners will be able to:
-
 - Describe what bash scripting is and why they might want to learn it for data management and research
 - Navigate their file system using the bash shell
 - View and edit the contents of a file from the bash shell

bash_command_line_102/bash_command_line_102.md

@@ -2,7 +2,7 @@
 module_id: bash_command_line_102
 author:   Nicole Feldman and Elizabeth Drellich
 email:    feldmanna@chop.edu and drelliche@chop.edu
-version: 1.3.3
+version: 1.3.4
 current_version_description: Add emphasis about the permanence of `rm`; make liascript link(s) point to first page
 module_type: standard
 docs_version: 3.0.0
@@ -19,8 +19,6 @@ Learners should be familiar with using a bash shell to navigate a directory syst
 @end
 
 @learning_objectives
-After completion of this module, learners will be able to:
-
 - Search existing files for particular character strings.
 - Search folders for files with certain titles.
 - Move files to new locations in a directory system.

bash_conditionals_loops/bash_conditionals_loops.md

@@ -2,7 +2,7 @@
 module_id: bash_conditionals_loops
 author:   Elizabeth Drellich
 email:    drelliche@chop.edu
-version: 1.2.6
+version: 1.2.7
 current_version_description: Clarify `=` and `==` inside test functions; make liascript link(s) point to first page
 module_type: standard
 docs_version: 1.2.1
@@ -26,7 +26,7 @@ Only basic exposure to Bash is expected. The following is a list of actions and
 
 @learning_objectives  
 
-After completion of this module, learners will be able to:
+
 
 - Understand how a "for loop" works
 - Write a "for loop" in Bash  

bash_scripts/bash_scripts.md

@@ -2,7 +2,7 @@
 module_id: bash_scripts
 author:   Elizabeth Drellich
 email:    drelliche@chop.edu
-version: 1.3.4
+version: 1.3.5
 current_version_description: Added webinar links to additional resources; make liascript link(s) point to first page
 module_type: standard
 docs_version: 2.0.0
@@ -28,9 +28,6 @@ Bash commands that will be used without explanation include:
 @end
 
 @learning_objectives
-
-After completion of this module, learners will be able to:
-
 - Identify the structure of a Bash script
 - Run existing Bash scripts
 - Write simple Bash scripts

bias_variance_tradeoff/bias_variance_tradeoff.md

@@ -2,7 +2,7 @@
 module_id: bias_variance_tradeoff
 author:   Rose Hartman
 email:    hartmanr1@chop.edu
-version:  1.0.2
+version:  1.0.3
 current_version_description: Initial version.
 module_type: standard
 docs_version: 1.1.0
@@ -26,7 +26,7 @@ It's fine if you don't know how to conduct a regression analysis, but you should
 @end
 
 @learning_objectives  
-After completion of this module, learners will be able to:
+
 
 - define bias and variance as they apply to machine learning
 - explain the bias-variance tradeoff

citizen_science/citizen_science.md

@@ -2,7 +2,7 @@
 module_id: citizen_science
 author:   Rose Hartman
 email:    hartmanr1@chop.edu
-version: 1.0.5
+version: 1.0.6
 current_version_description: Initial version.
 module_type: standard
 docs_version: 1.0.0
@@ -24,7 +24,7 @@ None.
 
 @learning_objectives  
 
-After completion of this module, learners will be able to:
+
 
 - list several ways members of the public can contribute to scientific projects
 - recognize several different factors that motivate people to volunteer in citizen science

data_management_basics/data_management_basics.md

@@ -2,7 +2,7 @@
 module_id: data_management_basics
 author:   Ene Belleh
 email:    bellehe@chop.edu
-version: 1.1.5
+version: 1.1.6
 current_version_description: Fixed mermaidchart error that was causing diagram to not render; updated metadata; make liascript link(s) point to first page
 module_type: standard
 docs_version: 3.0.0
@@ -19,7 +19,7 @@ The only pre-requisite suggested for this module is experience working in resear
 
 @learning_objectives  
 
-After completion of this module, learners will be able to:
+
 
 - Define research data management
 - Explain why data management forms an important part of the responsible conduct of research

data_storage_models/data_storage_models.md

@@ -2,7 +2,7 @@
 module_id: data_storage_models
 author:   Nicole Feldman
 email:    feldmanna@chop.edu
-version: 1.1.6
+version: 1.1.7
 current_version_description: Updated quiz questions and metadata; make liascript link(s) point to first page
 module_type: standard
 docs_version: 2.0.0
@@ -20,8 +20,6 @@ None, this module is intended for all end users regardless of their technical sk
 
 @learning_objectives
 
-After completion of this module, learners will be able to:
-
 - Identify and describe different data storage solutions
 - Understand the benefits and the limitations of each covered storage solution
 - Describe what computational tasks are best suited to the described data storage types

data_visualization_in_ggplot2/data_visualization_in_ggplot2.md

@@ -2,7 +2,7 @@
 module_id: data_visualization_in_ggplot2
 author:   Rose Hartman
 email:    hartmanr1@chop.edu
-version: 1.4.8
+version: 1.4.9
 current_version_description: Updated with new metadata and to remove references to Binderhub; make liascript link(s) point to first page
 module_type: standard
 docs_version: 2.0.0
@@ -33,7 +33,7 @@ If you are brand new to R (or want a refresher) consider starting with [Intro to
 
 @learning_objectives  
 
-After completion of this module, learners will be able to:
+
 
 - use ggplot2 to create several common data visualizations
 - customize some elements of a plot, and know where to look to learn how to customize others

data_visualization_in_open_source_software/data_visualization_in_open_source_software.md

@@ -2,7 +2,7 @@
 module_id: data_visualization_in_open_source_software
 author:   Rose Hartman
 email:    hartmanr1@chop.edu
-version: 1.2.3
+version: 1.2.4
 current_version_description: Update highlight boxes, update front matter, replace text with macros.
 module_type: standard
 docs_version: 1.0.0
@@ -29,8 +29,6 @@ This module also assumes some basic familiarity with either R or python, but is
 
 @learning_objectives
 
-After completion of this module, learners will be able to:
-
 - identify key elements in a plot that communicate information about the data
 - describe the role ggplot2 and seaborn play in the R and python programming languages, respectively
 - describe a typical data vizualization workflow

data_visualization_in_seaborn/data_visualization_in_seaborn.md

@@ -2,7 +2,7 @@
 module_id: data_visualization_in_seaborn
 author:   Rose Hartman
 email:    hartmanr1@chop.edu
-version: 1.4.1
+version: 1.4.2
 current_version_description: Add Python Basics series and Transform data with pandas as additional prerequisites; make liascript link(s) point to first page
 module_type: standard
 docs_version: 3.0.0
@@ -35,7 +35,7 @@ If you are brand new to python (or want a refresher) consider starting with [Dem
 
 @learning_objectives  
 
-After completion of this module, learners will be able to:
+
 
 - use seaborn to create several common data visualizations
 - customize some elements of a plot, and know where to look to learn how to customize others

database_normalization/database_normalization.md

@@ -2,7 +2,7 @@
 module_id: database_normalization
 author:   Joy Payton
 email:    paytonk@chop.edu
-version: 1.0.7
+version: 1.0.8
 current_version_description: Initial Version.
 module_type: standard
 docs_version: 2.0.0
@@ -19,7 +19,7 @@ Learners should have experience working with data in tables.  This could include
 @end
 
 @learning_objectives  
-After completion of this module, learners will be able to:
+
 
 - Explain the significance of "one to many" data relationships and how these relationships affect data organization
 - Describe how a normalized database is typically organized

demystifying_apis/demystifying_apis.md

@@ -2,7 +2,7 @@
 module_id: demystifying_api
 author:   Joy Payton
 email:    paytonk@chop.edu
-version:  1.0.1
+version:  1.0.2
 current_version_description: Initial version; make liascript link(s) point to first page
 module_type: standard
 docs_version: 4.0.0
@@ -19,7 +19,7 @@ No particular skills or experience are required for this module.
 @end
 
 @learning_objectives  
-After completion of this module, learners will be able to:
+
 
 - Define the term *application programming interface* (API)
 - Explain why APIs can be useful to biomedical researchers

demystifying_command_line/demystifying_command_line.md

@@ -2,7 +2,7 @@
 module_id: demystifying_command_line
 author:   Joy Payton
 email:    paytonk@chop.edu
-version:  1.0.2
+version:  1.0.3
 current_version_description: Add link to Demystifying APIs; make liascript link(s) point to first page
 module_type: standard
 docs_version: 4.0.0
@@ -19,7 +19,7 @@ No particular skills or experience are required for this module.
 @end
 
 @learning_objectives  
-After completion of this module, learners will be able to:
+
 
 - Define the term *interface*
 - Explain how a computer user interacts with a command line interface 

demystifying_containers/demystifying_containers.md

@@ -2,7 +2,7 @@
 module_id: demystifying_containers
 author:   Meredith Lee
 email:    leemc@chop.edu
-version:  1.0.3
+version:  1.0.4
 current_version_description: Initial version
 module_type: standard
 docs_version: 1.0.0
@@ -23,7 +23,7 @@ The module assumes no prior familiarity with containers and requires no coding e
 @end
 
 @learning_objectives  
-After completion of this module, learners will be able to:
+
 
 - understand when it might be useful to use containers for research
 - describe the basic concept of containerization

demystifying_geospatial_data/demystifying_geospatial_data.md

@@ -2,7 +2,7 @@
 module_id: demystifying_geospatial_data
 author:   Elizabeth Drellich
 email:    drelliche@chop.edu
-version: 1.2.1
+version: 1.2.2
 current_version_description: Improve hyperlink accessibility
 module_type: standard
 docs_version: 1.2.0
@@ -24,7 +24,7 @@ No prior knowledge or experience of geospatial data is required.
 
 @learning_objectives  
 
-After completion of this module, learners will be able to:
+
 
 - Define geospatial data
 - Describe some of the benefits of using geospatial data

demystifying_large_language_models/demystifying_large_language_models.md

@@ -2,7 +2,7 @@
 module_id: demystifying_large_language_models
 author:   Joy Payton
 email:    paytonk@chop.edu
-version:  1.0.5
+version:  1.0.6
 current_version_description: Initial version
 module_type: standard
 docs_version: 2.0.0
@@ -23,7 +23,7 @@ None.
 @end
 
 @learning_objectives  
-After completion of this module, learners will be able to:
+
 
 - Define "large language model" (LLM) 
 - Give a brief description of n-grams and word vectors