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Commits on Dec 10, 2019

• changed analysis errors print statement

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• changed shebang to handle virt envs; rearranged modules to differentiate std lib from externals; updated version

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• add example install; list dependencies; list citations

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Commits on Dec 13, 2019

• py2.7 compatible with recursive Fast5 searches, use realpath instead of abspath to handle symlinks, allow ~ input with expanduser, use path.join for nonsystem call var assignments, cleaned extra sp…

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Commits on Dec 16, 2019

• drop unused modules, use mp stdlib, reorganize database_default lines, use and handle None args especially with paths, add filesize requirement >0 for validate_file() to return True, avoid shutil.w…

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Commits on Dec 19, 2019

• added -h and -V opts

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• default uses all CPUs, unspecified args exits with error code 1, warn --list-organisms not implemented yet

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Commits on Dec 20, 2019

• added print_organisms function so --list-organisms now works

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