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collect genotype imputation, GWAS, image processing, and machine learning related scripts

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YinchaoHe/schnablelab

 
 

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Installation

For example, if you want to install it to ~/MyRepo, do the following:

$ cd ~/MyRepo
$ git clone git@github.com:freemao/schnablelab.git

Then add export PYTHONPATH=~/MyRepo:$PYTHONPATH to your ~/.bashrc file and run $ source ~/.bashrc to update your PYTHONPATH.

Dependencies

dependencies for some functions

All the dependencies can be installed through easy_install, pip or conda install.

set up the running environment using conda

conda create --name my_env --file spec_file.csv
conda activate my_env
python -m schnablelab ...

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collect genotype imputation, GWAS, image processing, and machine learning related scripts

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  • Jupyter Notebook 54.1%
  • Python 45.0%
  • Other 0.9%