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Enable tests #510

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merged 6 commits into from
Jul 12, 2024
Merged

Enable tests #510

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2084d6c
fix DSG subet writer tests
Jul 10, 2024
77ad613
spotless
Jul 12, 2024
c5f6bfe
clean up
Jul 12, 2024
bf0570c
enable two more ignored tests
Jul 12, 2024
6283369
Remove comment
Jul 12, 2024
b20919f
Spotless fix
Jul 12, 2024
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1 change: 0 additions & 1 deletion tds/src/integrationTests/java/thredds/server/services/ConsistentDatesTest.java
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Expand Up @@ -157,7 +157,6 @@ public void checkNCSSDates() throws JDOMException, IOException {
}

// PF5_SST_Climatology: :units = "hour since 0000-01-01 00:00:00";
@Ignore("TODO: fix to work with new cfpointwriters")
@Test
public void checkNCSSDatesInNetcdf() throws JDOMException, IOException {
String endpoint = TestOnLocalServer.withHttpPath(
Expand Down
9 changes: 3 additions & 6 deletions ...rc/main/java/thredds/server/ncss/view/dsg/station/AbstractStationProfileSubsetWriter.java
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Expand Up @@ -69,18 +69,15 @@ public void write() throws Exception {
// Perform temporal subset. We do this even when a time instant is specified, in which case wantedRange
// represents a sanity check (i.e. "give me the feature closest to the specified time, but it must at least be
// within an hour").
StationProfileFeature subsettedStationProfileFeat = ((StationProfileFeature) profileFeat);
if (wantedRange != null) {
subsettedStationProfileFeat = subsettedStationProfileFeat.subset(wantedRange);
profileFeat = ((StationProfileFeature) profileFeat).subset(wantedRange);
}

if (ncssParams.getTime() != null) {
CalendarDate wantedTime = ncssParams.getTime();
subsettedStationProfileFeat = new ClosestTimeStationProfileFeatureSubset(
(StationProfileFeatureImpl) subsettedStationProfileFeat, wantedTime);
profileFeat = new ClosestTimeStationProfileFeatureSubset((StationProfileFeatureImpl) profileFeat, wantedTime);
}

count += writeStationProfileTimeSeriesFeature(subsettedStationProfileFeat);
count += writeStationProfileTimeSeriesFeature((StationProfileFeature) profileFeat);
}

if (count == 0) {
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9 changes: 6 additions & 3 deletions tds/src/main/java/thredds/server/ncss/view/dsg/station/StationProfileSubsetWriterNetcdf.java
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Expand Up @@ -86,7 +86,9 @@ public HttpHeaders getHttpHeaders(String datasetPath, boolean isStream) {

@Override
protected void writeHeader(StationProfileFeature stn) throws Exception {
return;
ArrayList<StationFeature> asList = new ArrayList<>();
asList.add(stn);
cfWriter.writeHeader(asList);
}

@Override
Expand All @@ -95,8 +97,9 @@ protected void writeProfileFeature(StationProfileFeature stn, ProfileFeature pro
}

@Override
protected void writeStationPointFeature(StationProfileFeature stn, StationPointFeature stationPointFeat) {
return;
protected void writeStationPointFeature(StationProfileFeature stn, StationPointFeature stationPointFeat)
throws Exception {
cfWriter.writeObsData(stationPointFeat);
}

@Override
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1 change: 0 additions & 1 deletion tds/src/test/java/thredds/server/ncss/controller/gridaspoint/TestGridAsPointMisc.java
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Expand Up @@ -71,7 +71,6 @@ public void getGridAsPointSubsetAllSupportedFormats() throws Exception {
}
}

@Ignore("TODO: fix to work with new cfpointwriters")
@Test
public void getGridAsProfileSubsetAllSupportedFormats() throws Exception {
for (SupportedFormat sf : SupportedOperation.GRID_AS_POINT_REQUEST.getSupportedFormats()) {
Expand Down
1 change: 0 additions & 1 deletion tds/src/test/java/thredds/server/ncss/view/dsg/DsgSubsetWriterTest.java
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Expand Up @@ -40,7 +40,6 @@
* Created by cwardgar on 2014/05/27.
*/
@RunWith(Parameterized.class)
@Ignore("TODO: fix to work with new cfpointwriters")
public class DsgSubsetWriterTest {
private static final Logger logger = LoggerFactory.getLogger(MethodHandles.lookup().lookupClass());
@Rule
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2 changes: 1 addition & 1 deletion tds/src/test/resources/thredds/server/ncss/view/dsg/point/netcdf3/outputAll.ncml
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Expand Up @@ -44,7 +44,7 @@
<values>10.0 40.0 70.0 100.0 130.0 160.0 190.0 220.0 250.0 280.0 310.0 340.0 370.0 400.0 430.0</values>
</variable>

<attribute name="Conventions" value="CF-1.6" />
<attribute name="Conventions" value="CF-1.9" />
<attribute name="history" value="Written by CFPointWriter" />
<attribute name="title" value="Extracted data from TDS Feature Collection file:C:\Users\cwardgar\dev\projects\thredds\tds\src\test\resources\thredds\server\ncss\view\dsg\point.ncml" />
<attribute name="time_coverage_start" value="1970-01-01T00:00:00Z" />
Expand Down
2 changes: 1 addition & 1 deletion tds/src/test/resources/thredds/server/ncss/view/dsg/point/netcdf3/outputSubset.ncml
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Expand Up @@ -36,7 +36,7 @@
<values>10.0 13.0 16.0 19.0</values>
</variable>

<attribute name="Conventions" value="CF-1.6" />
<attribute name="Conventions" value="CF-1.9" />
<attribute name="history" value="Written by CFPointWriter" />
<attribute name="title" value="Extracted data from TDS Feature Collection file:C:\Users\cwardgar\dev\projects\thredds\tds\src\test\resources\thredds\server\ncss\view\dsg\point.ncml" />
<attribute name="time_coverage_start" value="1970-01-01T01:00:00Z" />
Expand Down
2 changes: 1 addition & 1 deletion tds/src/test/resources/thredds/server/ncss/view/dsg/point/netcdf4/outputAll.ncml
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Expand Up @@ -50,7 +50,7 @@
<values>10.0 40.0 70.0 100.0 130.0 160.0 190.0 220.0 250.0 280.0 310.0 340.0 370.0 400.0 430.0</values>
</variable>

<attribute name="Conventions" value="CF-1.6" />
<attribute name="Conventions" value="CF-1.9" />
<attribute name="history" value="Written by CFPointWriter" />
<attribute name="title" value="Extracted data from TDS Feature Collection file:C:\Users\cwardgar\dev\projects\thredds\tds\src\test\resources\thredds\server\ncss\view\dsg\point.ncml" />
<attribute name="time_coverage_start" value="1970-01-01T00:00:00Z" />
Expand Down
2 changes: 1 addition & 1 deletion tds/src/test/resources/thredds/server/ncss/view/dsg/point/netcdf4/outputSubset.ncml
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Expand Up @@ -41,7 +41,7 @@
<values>10.0 13.0 16.0 19.0</values>
</variable>

<attribute name="Conventions" value="CF-1.6" />
<attribute name="Conventions" value="CF-1.9" />
<attribute name="history" value="Written by CFPointWriter" />
<attribute name="title" value="Extracted data from TDS Feature Collection file:C:\Users\cwardgar\dev\projects\thredds\tds\src\test\resources\thredds\server\ncss\view\dsg\point.ncml" />
<attribute name="time_coverage_start" value="1970-01-01T01:00:00Z" />
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5 changes: 2 additions & 3 deletions tds/src/test/resources/thredds/server/ncss/view/dsg/station/netcdf3/outputAll.ncml
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Expand Up @@ -20,8 +20,7 @@
<variable name="stationAltitude" shape="station" type="double">
<attribute name="units" value="m" />
<attribute name="long_name" value="station altitude" />
<attribute name="standard_name" value="surface_altitude" />
<attribute name="positive" value="up" />
<attribute name="standard_name" value="station_altitude" />
<values>100.0 106.0 112.0</values>
</variable>

Expand Down Expand Up @@ -66,7 +65,7 @@
<values>10.0 40.0 70.0 100.0 130.0 160.0 190.0 220.0 250.0 280.0 310.0 340.0 370.0 400.0 430.0</values>
</variable>

<attribute name="Conventions" value="CF-1.6" />
<attribute name="Conventions" value="CF-1.9" />
<attribute name="history" value="Written by CFPointWriter" />
<attribute name="title" value="Extracted data from TDS using CDM remote subsetting" />
<attribute name="time_coverage_start" value="1970-01-01T00:00:00Z" />
Expand Down
5 changes: 2 additions & 3 deletions tds/src/test/resources/thredds/server/ncss/view/dsg/station/netcdf3/outputSubset1.ncml
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Expand Up @@ -20,8 +20,7 @@
<variable name="stationAltitude" shape="station" type="double">
<attribute name="units" value="m" />
<attribute name="long_name" value="station altitude" />
<attribute name="standard_name" value="surface_altitude" />
<attribute name="positive" value="up" />
<attribute name="standard_name" value="station_altitude" />
<values>100.0 112.0</values>
</variable>

Expand Down Expand Up @@ -58,7 +57,7 @@
<values>40.0 70.0 100.0 340.0 370.0 400.0</values>
</variable>

<attribute name="Conventions" value="CF-1.6" />
<attribute name="Conventions" value="CF-1.9" />
<attribute name="history" value="Written by CFPointWriter" />
<attribute name="title" value="Extracted data from TDS using CDM remote subsetting" />
<attribute name="time_coverage_start" value="1970-01-11T00:00:00Z" />
Expand Down
5 changes: 2 additions & 3 deletions tds/src/test/resources/thredds/server/ncss/view/dsg/station/netcdf3/outputSubset2.ncml
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Expand Up @@ -20,8 +20,7 @@
<variable name="stationAltitude" shape="station" type="double">
<attribute name="units" value="m" />
<attribute name="long_name" value="station altitude" />
<attribute name="standard_name" value="surface_altitude" />
<attribute name="positive" value="up" />
<attribute name="standard_name" value="station_altitude" />
<values>100.0 106.0 112.0</values>
</variable>

Expand Down Expand Up @@ -66,7 +65,7 @@
<values>70.0 220.0 370.0</values>
</variable>

<attribute name="Conventions" value="CF-1.6" />
<attribute name="Conventions" value="CF-1.9" />
<attribute name="history" value="Written by CFPointWriter" />
<attribute name="title" value="Extracted data from TDS using CDM remote subsetting" />
<attribute name="time_coverage_start" value="1970-01-21T00:00:00Z" />
Expand Down
5 changes: 2 additions & 3 deletions tds/src/test/resources/thredds/server/ncss/view/dsg/station/netcdf4/outputAll.ncml
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Expand Up @@ -20,8 +20,7 @@
<variable name="stationAltitude" shape="station" type="double">
<attribute name="units" value="m" />
<attribute name="long_name" value="station altitude" />
<attribute name="standard_name" value="surface_altitude" />
<attribute name="positive" value="up" />
<attribute name="standard_name" value="station_altitude" />
<values>100.0 106.0 112.0</values>
</variable>

Expand Down Expand Up @@ -70,7 +69,7 @@
<values>10.0 40.0 70.0 100.0 130.0 160.0 190.0 220.0 250.0 280.0 310.0 340.0 370.0 400.0 430.0</values>
</variable>

<attribute name="Conventions" value="CF-1.6" />
<attribute name="Conventions" value="CF-1.9" />
<attribute name="history" value="Written by CFPointWriter" />
<attribute name="title" value="Extracted data from TDS using CDM remote subsetting" />
<attribute name="time_coverage_start" value="1970-01-01T00:00:00Z" />
Expand Down
5 changes: 2 additions & 3 deletions tds/src/test/resources/thredds/server/ncss/view/dsg/station/netcdf4/outputSubset1.ncml
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Expand Up @@ -20,8 +20,7 @@
<variable name="stationAltitude" shape="station" type="double">
<attribute name="units" value="m" />
<attribute name="long_name" value="station altitude" />
<attribute name="standard_name" value="surface_altitude" />
<attribute name="positive" value="up" />
<attribute name="standard_name" value="station_altitude" />
<values>100.0 112.0</values>
</variable>

Expand Down Expand Up @@ -61,7 +60,7 @@
<values>40.0 70.0 100.0 340.0 370.0 400.0</values>
</variable>

<attribute name="Conventions" value="CF-1.6" />
<attribute name="Conventions" value="CF-1.9" />
<attribute name="history" value="Written by CFPointWriter" />
<attribute name="title" value="Extracted data from TDS using CDM remote subsetting" />
<attribute name="time_coverage_start" value="1970-01-11T00:00:00Z" />
Expand Down
5 changes: 2 additions & 3 deletions tds/src/test/resources/thredds/server/ncss/view/dsg/station/netcdf4/outputSubset2.ncml
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Expand Up @@ -20,8 +20,7 @@
<variable name="stationAltitude" shape="station" type="double">
<attribute name="units" value="m" />
<attribute name="long_name" value="station altitude" />
<attribute name="standard_name" value="surface_altitude" />
<attribute name="positive" value="up" />
<attribute name="standard_name" value="station_altitude" />
<values>100.0 106.0 112.0</values>
</variable>

Expand Down Expand Up @@ -70,7 +69,7 @@
<values>70.0 220.0 370.0</values>
</variable>

<attribute name="Conventions" value="CF-1.6" />
<attribute name="Conventions" value="CF-1.9" />
<attribute name="history" value="Written by CFPointWriter" />
<attribute name="title" value="Extracted data from TDS using CDM remote subsetting" />
<attribute name="time_coverage_start" value="1970-01-21T00:00:00Z" />
Expand Down
2 changes: 1 addition & 1 deletion tds/src/test/resources/thredds/server/ncss/view/dsg/station_profile/input.ncml
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Expand Up @@ -60,5 +60,5 @@
</variable>

<attribute name="featureType" value="timeSeriesProfile"/>
<attribute name="Conventions" value="CF-1.6"/>
<attribute name="Conventions" value="CF-1.9"/>
</netcdf>
14 changes: 11 additions & 3 deletions tds/src/test/resources/thredds/server/ncss/view/dsg/station_profile/netcdf3/outputAll.ncml
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Expand Up @@ -44,6 +44,14 @@
<values>3 3 3 3 3 3 3 3 3 3 3 3 3 3 3</values>
</variable>

<variable name="time" shape="obs" type="double">
<attribute name="units" value="Day since 1970-01-01T00:00:00Z" />
<attribute name="long_name" value="nominal time of profile" />
<values>0.0 0.0 0.0 10.0 10.0 10.0 20.0 20.0 20.0 30.0 30.0 30.0 40.0 40.0 40.0
0.0 0.0 0.0 10.0 10.0 10.0 20.0 20.0 20.0 30.0 30.0 30.0 40.0 40.0 40.0
0.0 0.0 0.0 10.0 10.0 10.0 20.0 20.0 20.0 30.0 30.0 30.0 40.0 40.0 40.0</values>
</variable>

<variable name="profileTime" shape="profile" type="double">
<attribute name="units" value="Day since 1970-01-01T00:00:00Z" />
<attribute name="long_name" value="nominal time of profile" />
Expand All @@ -69,19 +77,19 @@
<attribute name="units" value="kg m-2 s-1" />
<attribute name="long_name" value="precipitation_flux" />
<attribute name="standard_name" value="precipitation_flux" />
<attribute name="coordinates" value="profileTime latitude longitude altitude"/>
<attribute name="coordinates" value="time latitude longitude altitude"/>
<values>1 4 7 10 13 16 19 22 25 28 31 34 37 40 43 46 49 52 55 58 61 64 67 70 73 76 79 82 85 88 91 94 97 100 103 106 109 112 115 118 121 124 127 130 133</values>
</variable>

<variable name="tas" shape="obs" type="float">
<attribute name="units" value="K" />
<attribute name="long_name" value="air_temperature" />
<attribute name="standard_name" value="air_temperature" />
<attribute name="coordinates" value="profileTime latitude longitude altitude"/>
<attribute name="coordinates" value="time latitude longitude altitude"/>
<values>10 40 70 100 130 160 190 220 250 280 310 340 370 400 430 460 490 520 550 580 610 640 670 700 730 760 790 820 850 880 910 940 970 1000 1030 1060 1090 1120 1150 1180 1210 1240 1270 1300 1330</values>
</variable>

<attribute name="Conventions" value="CF-1.6" />
<attribute name="Conventions" value="CF-1.9" />
<attribute name="history" value="Written by CFPointWriter" />
<attribute name="title" value="Extracted data from TDS Feature Collection" />
<attribute name="time_coverage_start" value="1970-01-01T00:00:00Z" />
Expand Down
13 changes: 10 additions & 3 deletions ...rc/test/resources/thredds/server/ncss/view/dsg/station_profile/netcdf3/outputSubset1.ncml
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Expand Up @@ -48,7 +48,14 @@
<attribute name="units" value="Day since 1970-01-01T00:00:00Z" />
<attribute name="long_name" value="nominal time of profile" />
<attribute name="calendar" value="proleptic_gregorian" />
<values>10.0 20.0 30.0 10.0 20.0 30.0</values>
<values>10.0 20.0 30.0 10.0 20.0 30.0</values>
</variable>

<variable name="time" shape="obs" type="double">
<attribute name="units" value="Day since 1970-01-01T00:00:00Z" />
<attribute name="long_name" value="nominal time of profile" />
<values>10.0 10.0 10.0 20.0 20.0 20.0 30.0 30.0 30.0
10.0 10.0 10.0 20.0 20.0 20.0 30.0 30.0 30.0</values>
</variable>

<variable name="stationIndex" shape="profile" type="int">
Expand All @@ -69,11 +76,11 @@
<attribute name="units" value="K" />
<attribute name="long_name" value="air_temperature" />
<attribute name="standard_name" value="air_temperature" />
<attribute name="coordinates" value="profileTime latitude longitude altitude" />
<attribute name="coordinates" value="time latitude longitude altitude" />
<values>100 130 160 190 220 250 280 310 340 1000 1030 1060 1090 1120 1150 1180 1210 1240</values>
</variable>

<attribute name="Conventions" value="CF-1.6" />
<attribute name="Conventions" value="CF-1.9" />
<attribute name="history" value="Written by CFPointWriter" />
<attribute name="title" value="Extracted data from TDS Feature Collection"/>
<attribute name="geospatial_lat_min" type="double" value="39.9995" />
Expand Down
12 changes: 9 additions & 3 deletions ...rc/test/resources/thredds/server/ncss/view/dsg/station_profile/netcdf3/outputSubset2.ncml
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Expand Up @@ -51,6 +51,12 @@
<values>20.0 20.0 20.0</values>
</variable>

<variable name="time" shape="obs" type="double">
<attribute name="units" value="Day since 1970-01-01T00:00:00Z" />
<attribute name="long_name" value="nominal time of profile" />
<values>20.0 20.0 20.0 20.0 20.0 20.0 20.0 20.0 20.0</values>
</variable>

<variable name="stationIndex" shape="profile" type="int">
<attribute name="long_name" value="station index for this profile" />
<attribute name="instance_dimension" value="station" />
Expand All @@ -69,19 +75,19 @@
<attribute name="units" value="kg m-2 s-1" />
<attribute name="long_name" value="precipitation_flux" />
<attribute name="standard_name" value="precipitation_flux" />
<attribute name="coordinates" value="profileTime latitude longitude altitude"/>
<attribute name="coordinates" value="time latitude longitude altitude"/>
<values>19 22 25 64 67 70 109 112 115</values>
</variable>

<variable name="tas" shape="obs" type="float">
<attribute name="units" value="K" />
<attribute name="long_name" value="air_temperature" />
<attribute name="standard_name" value="air_temperature" />
<attribute name="coordinates" value="profileTime latitude longitude altitude"/>
<attribute name="coordinates" value="time latitude longitude altitude"/>
<values>190 220 250 640 670 700 1090 1120 1150</values>
</variable>

<attribute name="Conventions" value="CF-1.6" />
<attribute name="Conventions" value="CF-1.9" />
<attribute name="history" value="Written by CFPointWriter" />
<attribute name="title" value="Extracted data from TDS Feature Collection" />
<attribute name="time_coverage_start" value="1970-01-21T00:00:00Z" />
Expand Down
15 changes: 12 additions & 3 deletions tds/src/test/resources/thredds/server/ncss/view/dsg/station_profile/netcdf4/outputAll.ncml
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Expand Up @@ -57,6 +57,15 @@
<values>0 0 0 0 0 1 1 1 1 1 2 2 2 2 2</values>
</variable>

<variable name="time" shape="obs" type="double">
<attribute name="units" value="Day since 1970-01-01T00:00:00Z" />
<attribute name="long_name" value="nominal time of profile" />
<attribute name="_ChunkSizes" type="uint" value="1024" />
<values>0.0 0.0 0.0 10.0 10.0 10.0 20.0 20.0 20.0 30.0 30.0 30.0 40.0 40.0 40.0
0.0 0.0 0.0 10.0 10.0 10.0 20.0 20.0 20.0 30.0 30.0 30.0 40.0 40.0 40.0
0.0 0.0 0.0 10.0 10.0 10.0 20.0 20.0 20.0 30.0 30.0 30.0 40.0 40.0 40.0</values>
</variable>

<variable name="altitude" shape="obs" type="double">
<attribute name="units" value="m" />
<attribute name="long_name" value="obs altitude" />
Expand All @@ -70,7 +79,7 @@
<attribute name="units" value="kg m-2 s-1" />
<attribute name="long_name" value="precipitation_flux" />
<attribute name="standard_name" value="precipitation_flux" />
<attribute name="coordinates" value="profileTime latitude longitude altitude"/>
<attribute name="coordinates" value="time latitude longitude altitude"/>
<attribute name="_ChunkSizes" type="uint" value="2048" />
<values>1 4 7 10 13 16 19 22 25 28 31 34 37 40 43 46 49 52 55 58 61 64 67 70 73 76 79 82 85 88 91 94 97 100 103 106 109 112 115 118 121 124 127 130 133</values>
</variable>
Expand All @@ -79,12 +88,12 @@
<attribute name="units" value="K" />
<attribute name="long_name" value="air_temperature" />
<attribute name="standard_name" value="air_temperature" />
<attribute name="coordinates" value="profileTime latitude longitude altitude"/>
<attribute name="coordinates" value="time latitude longitude altitude"/>
<attribute name="_ChunkSizes" type="uint" value="2048" />
<values>10 40 70 100 130 160 190 220 250 280 310 340 370 400 430 460 490 520 550 580 610 640 670 700 730 760 790 820 850 880 910 940 970 1000 1030 1060 1090 1120 1150 1180 1210 1240 1270 1300 1330</values>
</variable>

<attribute name="Conventions" value="CF-1.6" />
<attribute name="Conventions" value="CF-1.9" />
<attribute name="history" value="Written by CFPointWriter" />
<attribute name="title" value="Extracted data from TDS Feature Collection" />
<attribute name="geospatial_lat_min" type="double" value="39.9995" />
Expand Down
12 changes: 10 additions & 2 deletions ...rc/test/resources/thredds/server/ncss/view/dsg/station_profile/netcdf4/outputSubset1.ncml
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Expand Up @@ -44,6 +44,14 @@
<values>3 3 3 3 3 3</values>
</variable>

<variable name="time" shape="obs" type="double">
<attribute name="units" value="Day since 1970-01-01T00:00:00Z" />
<attribute name="long_name" value="nominal time of profile" />
<attribute name="_ChunkSizes" type="uint" value="1024" />
<values>10.0 10.0 10.0 20.0 20.0 20.0 30.0 30.0 30.0
10.0 10.0 10.0 20.0 20.0 20.0 30.0 30.0 30.0</values>
</variable>

<variable name="profileTime" shape="profile" type="double">
<attribute name="units" value="Day since 1970-01-01T00:00:00Z" />
<attribute name="long_name" value="nominal time of profile" />
Expand All @@ -70,12 +78,12 @@
<attribute name="units" value="K" />
<attribute name="long_name" value="air_temperature" />
<attribute name="standard_name" value="air_temperature" />
<attribute name="coordinates" value="profileTime latitude longitude altitude"/>
<attribute name="coordinates" value="time latitude longitude altitude"/>
<attribute name="_ChunkSizes" type="uint" value="2048" />
<values>100 130 160 190 220 250 280 310 340 1000 1030 1060 1090 1120 1150 1180 1210 1240</values>
</variable>

<attribute name="Conventions" value="CF-1.6" />
<attribute name="Conventions" value="CF-1.9" />
<attribute name="history" value="Written by CFPointWriter" />
<attribute name="title" value="Extracted data from TDS Feature Collection" />
<attribute name="geospatial_lat_min" type="double" value="39.9995" />
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