Merge pull request #418 from UPHL-BioNGS/20250218

Update to 3.26.25049
UPHL-BioNGS · Feb 18, 2025 · c85424e · c85424e
2 parents eca1964 + 0321f4b
commit c85424e
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Showing 3 changed files with 5 additions and 5 deletions.
diff --git a/modules/local/freyja.nf b/modules/local/freyja.nf
@@ -1,7 +1,7 @@
 process FREYJA {
   tag           "${meta.id}"
   label         "process_medium"
-  container     'staphb/freyja:1.5.2-02_10_2025-01-52-2025-02-10'
+  container     'staphb/freyja:1.5.2-02_16_2025-01-49-2025-02-17'
 
   input:
   tuple val(meta), file(bam), file(reference_genome)
@@ -51,7 +51,7 @@ process FREYJA {
 process FREYJA_AGGREGATE {
   tag        "Aggregating results from freyja"
   label      "process_single"
-  container  'staphb/freyja:1.5.2-02_03_2025-02-26-2025-02-03'
+  container  'staphb/freyja:1.5.2-02_16_2025-01-49-2025-02-17'
 
   input:
   file(demix)

diff --git a/modules/local/nextclade.nf b/modules/local/nextclade.nf
@@ -1,7 +1,7 @@
 process NEXTCLADE_DATASET {
   tag        "Downloading Dataset"
   label      "process_medium"
-  container  'nextstrain/nextclade:3.9.1'
+  container  'nextstrain/nextclade:3.10.1'
 
   output:
   path "dataset", emit: dataset
@@ -38,7 +38,7 @@ process NEXTCLADE_DATASET {
 process NEXTCLADE {
   tag        "Clade Determination"
   label      "process_medium"
-  container  'nextstrain/nextclade:3.9.1'
+  container  'nextstrain/nextclade:3.10.1'
 
   input:
   file(fasta)

diff --git a/nextflow.config b/nextflow.config
@@ -274,7 +274,7 @@ manifest {
   name              = 'UPHL-BioNGS/Cecret'
   author            = 'Erin Young'
   homePage          = 'https://github.com/UPHL-BioNGS/Cecret'
-  version           = 'v3.26.25042'
+  version           = 'v3.26.25049'
   defaultBranch     = 'master'
   recurseSubmodules = false
   description       = 'Reference-based consensus creation'