headed to the debugger with tmate #9
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| on: | |
| workflow_dispatch: | |
| inputs: | |
| debug-enabled: | |
| type: boolean | |
| description: 'Run the build with tmate debugging enabled' | |
| required: false | |
| default: false | |
| push: | |
| branches: | |
| - main | |
| name: Publish ECTD bundle | |
| jobs: | |
| build-deploy: | |
| runs-on: ubuntu-latest | |
| permissions: | |
| contents: write | |
| pages: write | |
| id-token: write | |
| steps: | |
| - name: Check out repository | |
| uses: actions/checkout@v4 | |
| - name: Install R | |
| uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: '4.2.3' | |
| - name: Install R Dependencies | |
| uses: r-lib/actions/setup-renv@v2 | |
| with: | |
| cache-version: 1 | |
| - name: Compile ECTD Bundle (custom) | |
| run: | | |
| source("utils.R"); create_ectd_bundle() | |
| shell: Rscript {0} | |
| - name: Check out ECTD bundle destination repo | |
| uses: actions/checkout@v4 | |
| if: ${{ github.event_name == 'workflow_dispatch' && inputs.debug_enabled }} | |
| with: | |
| repository: RConsortium/submissions-pilot4-webR-to-fda | |
| path: ./submissions-pilot4-webR-to-fda | |
| token: ${{ secrets.API_TOKEN_GITHUB }} | |
| - name: Copy ECTD bundle | |
| run: bash ./.github/scripts/copy-ectd-bundle.sh | |
| env: | |
| DESTINATION_DIR: ./submissions-pilot4-webR-to-fda/m5/datasets/rconsortiumpilot4webR/analysis/adam/programs | |
| - name: Push ECTD bundle | |
| run: bash ./.github/scripts/push-ectd-bundle.sh |