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Documenting modelPlatformEffects.R

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Zhi Yang edited this page Jul 9, 2021 · 2 revisions

There are a total of five functions being merged in this PR.

  • estimate_platform_effects Function: It takes in two matrices, mean_profiles and fixed_profiles. Basically, it returns a vector of scaling factors for each gene of the fixed_profiles. Status: It is working so far on a simulated example. Caught a bug on the first gene.

  • estimateCellTypeProfiles Function: It estimates mean background-subtracted expression per cluster Status: it is working.

  • estimateRefScalingFactors: unfinished

  • estimateRefScalingFactors_stub: unfinished

  • estimateRefScalingFactors_meanratio Function: It estimates the calibration factor for the fixed_profiles. Status: it is working.

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