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updated datasets from previous releases
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avikd committed Aug 19, 2016
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1,336 changes: 1,016 additions & 320 deletions app/data/datasets/EGAD00001000673.json
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240 changes: 236 additions & 4 deletions app/data/datasets/EGAD00001000674.json
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Original file line number Diff line number Diff line change
Expand Up @@ -249,16 +249,248 @@
"alias" : "ena-DATASET-BLUEPRINT-10-10-2013-10:37:44:368-487",
"analysis_files" : [
{
"FILE" : "C0011I43.DNase.bwa.20130415.bam"
"withdrawn" : null,
"FILE" : "C0011I43.DNase.bwa.20130415.bam",
"GENETIC_CHARACTERISTICS" : "-",
"SAMPLE_STATUS" : "private",
"TREATMENT" : "-",
"SAMPLE_DESC_2" : "C0011I",
"STUDY_ID" : "ERP001748",
"SAMPLE_ONTOLOGY_URI" : [
{
"url" : "http://purl.obolibrary.org/obo/CL_0002057",
"label" : "CL_0002057"
},
{
"url" : "http://purl.obolibrary.org/obo/UBERON_0013756",
"label" : "UBERON_0013756"
}
],
"EXPERIMENT_ALIAS" : "Blueprint_C0011I43_DNaseI_80U",
"DONOR_ID" : "C0011I",
"SAMPLE_DESC_1" : "venous blood",
"FIRST_SUBMISSION_DATE" : "21-JAN-2013 08:59:06",
"READ_QUALITIES" : "phred",
"STUDY_NAME" : "BLUEPRINT DNase accessibility (NCMLS)",
"BIOMATERIAL_PROVIDER" : "NIHR Cambridge BioResource",
"LIBRARY_STRATEGY" : "DNase-Hypersensitivity",
"TISSUE_TYPE" : "venous blood",
"DONOR_REGION_OF_RESIDENCE" : "East Anglia",
"READ_STRAND" : "-",
"INSTRUMENT_PLATFORM" : "ILLUMINA",
"EXPERIMENT_ID" : "ERX197155",
"type" : "DS_BAM",
"CELL_LINE" : "-",
"TISSUE_DEPOT" : "-",
"EXPERIMENT_TYPE" : "Chromatin Accessibility",
"DISEASE" : "None",
"CELL_TYPE" : "CD14-positive, CD16-negative classical monocyte",
"SEQ_RUNS_COUNT" : "1",
"DISEASE_ONTOLOGY_URI" : [],
"SPECIMEN_PROCESSING" : "fresh",
"CENTER_NAME" : "NCMLS",
"LIBRARY_NAME" : "Blueprint_C0011I43_DNaseI_80U",
"FILE_SIZE" : "1993278910",
"SAMPLE_DESC_3" : "CD14-positive, CD16-negative classical monocyte",
"POOLED_DONOR_IDS" : "-",
"SPECIMEN_STORAGE" : "NA",
"DONOR_HEALTH_STATUS" : "NA",
"MOLECULE" : "genomic DNA",
"DONOR_AGE" : "50 - 55",
"LIBRARY_LAYOUT" : "SINGLE",
"SAMPLE_ID" : "ERS150394",
"INSTRUMENT_MODEL" : "Illumina HiSeq 2000",
"BIOMATERIAL_TYPE" : "Primary Cell",
"FILE_MD5" : "a365d0bbc7a6ccd70b6dc15585c489f3",
"SAMPLE_NAME" : "C0011I43",
"POOL_ID" : "-",
"EXPERIMENT_STATUS" : "private",
"TWIN_PAIR_ID" : "-",
"DONOR_SEX" : "Female",
"DONOR_ETHNICITY" : "Northern European"
},
{
"FILE" : "C001UY46.DNase.bwa.20130415.bam"
"withdrawn" : null,
"FILE" : "C001UY46.DNase.bwa.20130415.bam",
"GENETIC_CHARACTERISTICS" : "-",
"SAMPLE_STATUS" : "private",
"TREATMENT" : "-",
"SAMPLE_DESC_2" : "C001UY",
"STUDY_ID" : "ERP001748",
"SAMPLE_ONTOLOGY_URI" : [
{
"url" : "http://purl.obolibrary.org/obo/CL_0002057",
"label" : "CL_0002057"
},
{
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"label" : "UBERON_0013756"
}
],
"EXPERIMENT_ALIAS" : "Blueprint_C001UY46_DNaseI_80U",
"DONOR_ID" : "C001UY",
"SAMPLE_DESC_1" : "venous blood",
"FIRST_SUBMISSION_DATE" : "21-JAN-2013 08:59:06",
"READ_QUALITIES" : "phred",
"STUDY_NAME" : "BLUEPRINT DNase accessibility (NCMLS)",
"BIOMATERIAL_PROVIDER" : "NIHR Cambridge BioResource",
"LIBRARY_STRATEGY" : "DNase-Hypersensitivity",
"TISSUE_TYPE" : "venous blood",
"DONOR_REGION_OF_RESIDENCE" : "East Anglia",
"READ_STRAND" : "-",
"INSTRUMENT_PLATFORM" : "ILLUMINA",
"EXPERIMENT_ID" : "ERX197158",
"type" : "DS_BAM",
"CELL_LINE" : "-",
"TISSUE_DEPOT" : "-",
"EXPERIMENT_TYPE" : "Chromatin Accessibility",
"DISEASE" : "None",
"CELL_TYPE" : "CD14-positive, CD16-negative classical monocyte",
"SEQ_RUNS_COUNT" : "1",
"DISEASE_ONTOLOGY_URI" : [],
"SPECIMEN_PROCESSING" : "fresh",
"CENTER_NAME" : "NCMLS",
"LIBRARY_NAME" : "Blueprint_C001UY46_DNaseI_80U",
"FILE_SIZE" : "3545374720",
"SAMPLE_DESC_3" : "CD14-positive, CD16-negative classical monocyte",
"POOLED_DONOR_IDS" : "-",
"SPECIMEN_STORAGE" : "NA",
"DONOR_HEALTH_STATUS" : "NA",
"MOLECULE" : "genomic DNA",
"DONOR_AGE" : "60 - 65",
"LIBRARY_LAYOUT" : "SINGLE",
"SAMPLE_ID" : "ERS150419",
"INSTRUMENT_MODEL" : "Illumina HiSeq 2000",
"BIOMATERIAL_TYPE" : "Primary Cell",
"FILE_MD5" : "4c65deded5798b4ea9727e7f3de8d867",
"SAMPLE_NAME" : "C001UY46",
"POOL_ID" : "-",
"EXPERIMENT_STATUS" : "private",
"TWIN_PAIR_ID" : "-",
"DONOR_SEX" : "Male",
"DONOR_ETHNICITY" : "Northern European"
},
{
"FILE" : "C004084E.DNase.bwa.20130415.bam"
"withdrawn" : null,
"FILE" : "C0010K46.DNase.bwa.20130415.bam",
"GENETIC_CHARACTERISTICS" : "-",
"SAMPLE_STATUS" : "private",
"TREATMENT" : "-",
"SAMPLE_DESC_2" : "C0010K",
"STUDY_ID" : "ERP001748",
"SAMPLE_ONTOLOGY_URI" : [
{
"url" : "http://purl.obolibrary.org/obo/CL_0002057",
"label" : "CL_0002057"
},
{
"url" : "http://purl.obolibrary.org/obo/UBERON_0013756",
"label" : "UBERON_0013756"
}
],
"EXPERIMENT_ALIAS" : "Blueprint_C0010K46_DNaseI_80U",
"DONOR_ID" : "C0010K",
"SAMPLE_DESC_1" : "venous blood",
"FIRST_SUBMISSION_DATE" : "21-JAN-2013 08:59:06",
"READ_QUALITIES" : "phred",
"STUDY_NAME" : "BLUEPRINT DNase accessibility (NCMLS)",
"BIOMATERIAL_PROVIDER" : "NIHR Cambridge BioResource",
"LIBRARY_STRATEGY" : "DNase-Hypersensitivity",
"TISSUE_TYPE" : "venous blood",
"DONOR_REGION_OF_RESIDENCE" : "East Anglia",
"READ_STRAND" : "-",
"INSTRUMENT_PLATFORM" : "ILLUMINA",
"EXPERIMENT_ID" : "ERX197156",
"type" : "DS_BAM",
"CELL_LINE" : "-",
"TISSUE_DEPOT" : "-",
"EXPERIMENT_TYPE" : "Chromatin Accessibility",
"DISEASE" : "None",
"CELL_TYPE" : "CD14-positive, CD16-negative classical monocyte",
"SEQ_RUNS_COUNT" : "1",
"DISEASE_ONTOLOGY_URI" : [],
"SPECIMEN_PROCESSING" : "fresh",
"CENTER_NAME" : "NCMLS",
"LIBRARY_NAME" : "Blueprint_C0010K46_DNaseI_80U",
"FILE_SIZE" : "2444624602",
"SAMPLE_DESC_3" : "CD14-positive, CD16-negative classical monocyte",
"POOLED_DONOR_IDS" : "-",
"SPECIMEN_STORAGE" : "NA",
"DONOR_HEALTH_STATUS" : "NA",
"MOLECULE" : "genomic DNA",
"DONOR_AGE" : "60 - 65",
"LIBRARY_LAYOUT" : "SINGLE",
"SAMPLE_ID" : "ERS150397",
"INSTRUMENT_MODEL" : "Illumina HiSeq 2000",
"BIOMATERIAL_TYPE" : "Primary Cell",
"FILE_MD5" : "72baffdc4483734279200ef931c65699",
"SAMPLE_NAME" : "C0010K46",
"POOL_ID" : "-",
"EXPERIMENT_STATUS" : "private",
"TWIN_PAIR_ID" : "-",
"DONOR_SEX" : "Female",
"DONOR_ETHNICITY" : "Northern European"
},
{
"FILE" : "C0010K46.DNase.bwa.20130415.bam"
"withdrawn" : null,
"FILE" : "C004084E.DNase.bwa.20130415.bam",
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"SAMPLE_STATUS" : "private",
"TREATMENT" : "-",
"SAMPLE_DESC_2" : "C00408",
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],
"EXPERIMENT_ALIAS" : "Blueprint_C004084E_DNaseI_60U",
"DONOR_ID" : "C00408",
"SAMPLE_DESC_1" : "venous blood",
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"type" : "DS_BAM",
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"EXPERIMENT_TYPE" : "Chromatin Accessibility",
"DISEASE" : "None",
"CELL_TYPE" : "CD14-positive, CD16-negative classical monocyte",
"SEQ_RUNS_COUNT" : "1",
"DISEASE_ONTOLOGY_URI" : [],
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"CENTER_NAME" : "NCMLS",
"LIBRARY_NAME" : "Blueprint_C004084E_DNaseI_60U",
"FILE_SIZE" : "2416985821",
"SAMPLE_DESC_3" : "CD14-positive, CD16-negative classical monocyte",
"POOLED_DONOR_IDS" : "-",
"SPECIMEN_STORAGE" : "NA",
"DONOR_HEALTH_STATUS" : "NA",
"MOLECULE" : "genomic DNA",
"DONOR_AGE" : "55 - 60",
"LIBRARY_LAYOUT" : "SINGLE",
"SAMPLE_ID" : "ERS206426",
"INSTRUMENT_MODEL" : "Illumina HiSeq 2000",
"BIOMATERIAL_TYPE" : "Primary Cell",
"FILE_MD5" : "5d0eca0251bfc808b6507520f82e1372",
"SAMPLE_NAME" : "C004084E",
"POOL_ID" : "-",
"EXPERIMENT_STATUS" : "private",
"TWIN_PAIR_ID" : "-",
"DONOR_SEX" : "Male",
"DONOR_ETHNICITY" : "Northern European"
}
]
}
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