Skip to content

Commit

Permalink
Update config_base with new waning profile
Browse files Browse the repository at this point in the history
  • Loading branch information
kokbent authored Jan 23, 2024
1 parent bdcfd00 commit 09e7e51
Showing 1 changed file with 3 additions and 3 deletions.
6 changes: 3 additions & 3 deletions config/config_base.py
Original file line number Diff line number Diff line change
Expand Up @@ -63,12 +63,12 @@ def __init__(self, **kwargs) -> None:
self.INTRODUCTION_AGE_MASK = [False, True, False, False]
# number of compartments individuals wane through the moment of recovery.
# there is no explicit "recovered" compartment.
self.NUM_WANING_COMPARTMENTS = 4
self.NUM_WANING_COMPARTMENTS = 5
# the % protection from reinfection offered to individuals in each waning compartment.
# TODO SOURCE?
self.WANING_PROTECTIONS = jnp.array([1.0, 0.985, 0.985, 0])
self.WANING_PROTECTIONS = jnp.array([1.0, 0.942, 0.942, 0.942, 0.0])
# WANING_TIMES in days for each waning compartment, ends in 0 as last compartment does not wane
self.WANING_TIMES = [21, 142, 142, 0]
self.WANING_TIMES = [131, 134, 112, 81, 0]
# TODO use priors informed by https://www.sciencedirect.com/science/article/pii/S2352396423002992
# the protection afforded by different immune histories from infection.
# non-omicron vs omicron, stratified by immune history. 0 = fully susceptible, 1 = fully immune.
Expand Down

0 comments on commit 09e7e51

Please sign in to comment.