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Update generator.py #206

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merged 3 commits into from
Jan 31, 2025
Merged

Update generator.py #206

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0b0ed68
Update generator.py
tabbassidaloii Jan 30, 2025
3bfd4e6
Update generator.py
tabbassidaloii Jan 30, 2025
5972c2f
Update generator.py
tabbassidaloii Jan 30, 2025
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4 changes: 4 additions & 0 deletions src/pyBiodatafuse/graph/generator.py
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Original file line number Diff line number Diff line change
Expand Up @@ -939,6 +939,8 @@ def save_graph(
:param disease_compound: the input DataFrame containing disease-compound relationships.
:param graph_name: the name of the graph.
:param graph_dir: the directory to save the graph.
:returns: a NetworkX MultiDiGraph

"""
graph_path = f"{graph_dir}/{graph_name}"
os.makedirs(graph_path, exist_ok=True)
Expand All @@ -965,3 +967,5 @@ def save_graph(
pickle.dump(g, f)
nx.write_gml(g, graph_path_gml)
logger.warning(f"Graph saved in {graph_path_pickle} and {graph_path_gml}")

return g