Merge branch 'main' of https://github.com/BSC-CNS-EAPM/EAPM-plugins

BSC-CNS-EAPM · Jul 11, 2024 · a10a47f · a10a47f
2 parents cf0cfe2 + f0dfec8
commit a10a47f
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Showing 9 changed files with 72 additions and 19 deletions.
diff --git a/.gitignore b/.gitignore
@@ -168,6 +168,12 @@ deps/
 # .DS_Store files
 **/.DS_Store
 
+
 # Include bioprospecting
 Include/bioprospecting/*
-EAPM/Include/bioprospecting*
+EAPM/Include/bioprospecting*
+
+# Plugin configs
+EAPM/config
+package-lock.json
+
diff --git a/.vscode/settings.json b/.vscode/settings.json
@@ -6,7 +6,6 @@
         "--line-length",
         "98"
     ],
-    "python.analysis.typeCheckingMode": "off",
     "python.analysis.extraPaths": [
         "EAPM/deps/",
         "EAPM/Include/",
@@ -21,4 +20,4 @@
         "hmmer",
         "mafft"
     ]
-}
+}
diff --git a/EAPM/EAPM.py b/EAPM/EAPM.py
@@ -121,6 +121,10 @@ def create_plugin():
 
     eapm_plugin.addConfig(hmmerExecutableConfig)
 
+    from Pages.load_tables import load_page
+
+    eapm_plugin.addPage(load_page)
+
     # pylint: enable=import-outside-toplevel
 
     # Return the plugin

diff --git a/EAPM/Include/Pages/load_tables.py b/EAPM/Include/Pages/load_tables.py
@@ -0,0 +1,31 @@
+import urllib.parse
+import flask
+import urllib
+import os
+import HorusAPI
+
+load_page = HorusAPI.PluginPage(
+    id="load_tables",
+    name="Load tables",
+    description="Load tables",
+    html="index.html",
+    hidden=True,
+)
+
+
+def load_html():
+
+    path = flask.request.args.get("path")
+
+    # The path was safely encoded in the uri
+    path = urllib.parse.unquote(path)
+
+    if path is None or not os.path.exists(path):
+        return flask.jsonify({"error": "Path does not exist"}, 404)
+
+    return flask.send_file(path)
+
+
+load_page.addEndpoint(
+    HorusAPI.PluginEndpoint(url="/load_table", methods=["GET"], function=load_html)
+)
diff --git a/EAPM/Pages/index.html b/EAPM/Pages/index.html
@@ -0,0 +1,29 @@
+<!DOCTYPE html>
+<html lang="en">
+  <head>
+    <meta charset="UTF-8" />
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+    <title>Load HTML</title>
+  </head>
+  <body>
+    <a id="load" href="/plugins/pages/eapm.load_tables/load_table"
+      >Loading...</a
+    >
+    <script>
+      function loadData() {
+        const data = parent.extensionData;
+        if (data) {
+          const pathToLoad = encodeURIComponent(data.path);
+          const aElement = document.getElementById("load");
+          const url = new URL(window.location.href + "load_table");
+          url.searchParams.set("path", pathToLoad);
+          const urlToGet = url.toString();
+          aElement.href = urlToGet;
+          aElement.click();
+        }
+      }
+
+      document.addEventListener("DOMContentLoaded", loadData);
+    </script>
+  </body>
+</html>
diff --git a/EAPM/config/eapm.json b/EAPM/config/eapm.json
diff --git a/EAPM/config/eapm_Local.json b/EAPM/config/eapm_Local.json
diff --git a/EAPM/config/eapm_acc.json b/EAPM/config/eapm_acc.json
diff --git a/EAPM/config/eapm_nord3_test.json b/EAPM/config/eapm_nord3_test.json