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Diagnostics: Fix Position Selection #4914

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May 12, 2024
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Diagnostics: Fix Position Selection #4914

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7d51f86
Diagnostics: Warn w/o Positions
ax3l May 6, 2024
cc28d20
openPMD: Skip 0-positions for deselected comps
ax3l May 6, 2024
e848d8c
Clang-Tidy: Braces
ax3l May 7, 2024
2075825
Update Examples
ax3l May 8, 2024
c734171
RZ: x,y,z
ax3l May 8, 2024
b670db8
Fix: openPMD Low-D position/positionOffset
ax3l May 9, 2024
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5 changes: 3 additions & 2 deletions Docs/source/usage/parameters.rst
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Expand Up @@ -2689,10 +2689,11 @@ In-situ capabilities can be used by turning on Sensei or Ascent (provided they a

* ``<diag_name>.<species_name>.variables`` (list of `strings` separated by spaces, optional)
List of particle quantities to write to output.
Choices are ``w`` for the particle weight and ``ux`` ``uy`` ``uz`` for the particle momenta.
Choices are ``x``, ``y``, ``z`` for the particle positions (3D and RZ), ``x`` & ``z`` in 2D, ``z`` in 1D,
``w`` for the particle weight and ``ux``, ``uy``, ``uz`` for the particle momenta.
When using the lab-frame electrostatic solver, ``phi`` (electrostatic potential, on the macroparticles) is also available.
By default, all particle quantities (except ``phi``) are written.
If ``<diag_name>.<species_name>.variables = none``, no particle data are written, except for particle positions, which are always included.
If ``<diag_name>.<species_name>.variables = none``, no particle data are written.

* ``<diag_name>.<species_name>.random_fraction`` (`float`) optional
If provided ``<diag_name>.<species_name>.random_fraction = a``, only `a` fraction of the particle data of this species will be dumped randomly in diag ``<diag_name>``, i.e. if `rand() < a`, this particle will be dumped, where `rand()` denotes a random number generator.
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4 changes: 2 additions & 2 deletions Examples/Physics_applications/laser_acceleration/inputs_rz
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Expand Up @@ -89,5 +89,5 @@ diagnostics.diags_names = diag1
diag1.intervals = 10
diag1.diag_type = Full
diag1.fields_to_plot = Er Et Ez Br Bt Bz jr jt jz rho
diag1.electrons.variables = w ux uy uz orig_x orig_z
diag1.beam.variables = w ux uy uz
diag1.electrons.variables = x y z w ux uy uz orig_x orig_z
diag1.beam.variables = x y z w ux uy uz
2 changes: 1 addition & 1 deletion Examples/Physics_applications/uniform_plasma/inputs_3d
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Expand Up @@ -45,7 +45,7 @@ electrons.uz_th = 0.01 # uth the std of the (unitless) momentum
diagnostics.diags_names = diag1 chk
diag1.intervals = 4
diag1.diag_type = Full
diag1.electrons.variables = ux uy uz w
diag1.electrons.variables = x y z ux uy uz w
diag1.fields_to_plot = Bx By Bz Ex Ey Ez jx jy jz rho

chk.intervals = 6
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4 changes: 2 additions & 2 deletions Examples/Tests/Implicit/inputs_1d
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Expand Up @@ -71,8 +71,8 @@ diagnostics.diags_names = diag1
diag1.intervals = 100
diag1.diag_type = Full
diag1.fields_to_plot = Ex Ey Ez Bx By Bz jx jy jz rho divE
diag1.electrons.variables = w ux uy uz
diag1.protons.variables = w ux uy uz
diag1.electrons.variables = z w ux uy uz
diag1.protons.variables = z w ux uy uz

warpx.reduced_diags_names = particle_energy field_energy
particle_energy.type = ParticleEnergy
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4 changes: 2 additions & 2 deletions Examples/Tests/Implicit/inputs_1d_semiimplicit
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Expand Up @@ -71,8 +71,8 @@ diagnostics.diags_names = diag1
diag1.intervals = 100
diag1.diag_type = Full
diag1.fields_to_plot = Ex Ey Ez Bx By Bz jx jy jz rho divE
diag1.electrons.variables = w ux uy uz
diag1.protons.variables = w ux uy uz
diag1.electrons.variables = z w ux uy uz
diag1.protons.variables = z w ux uy uz

warpx.reduced_diags_names = particle_energy field_energy
particle_energy.type = ParticleEnergy
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4 changes: 2 additions & 2 deletions Examples/Tests/Implicit/inputs_vandb_2d
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Expand Up @@ -82,8 +82,8 @@ diagnostics.diags_names = diag1
diag1.intervals = 20
diag1.diag_type = Full
diag1.fields_to_plot = Ex Ey Ez Bx By Bz jx jy jz rho divE
diag1.electrons.variables = w ux uy uz
diag1.protons.variables = w ux uy uz
diag1.electrons.variables = x z w ux uy uz
diag1.protons.variables = x z w ux uy uz

warpx.reduced_diags_names = particle_energy field_energy
particle_energy.type = ParticleEnergy
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2 changes: 1 addition & 1 deletion Examples/Tests/electrostatic_sphere/inputs_rz
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Expand Up @@ -39,5 +39,5 @@ diag1.fields_to_plot = Er Et Ez rho
diag2.intervals = 30
diag2.diag_type = Full
diag2.fields_to_plot = none
diag2.electron.variables = ux uy uz w phi
diag2.electron.variables = x y z ux uy uz w phi
diag2.format = openpmd
4 changes: 2 additions & 2 deletions Examples/Tests/langmuir/inputs_3d
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Expand Up @@ -93,5 +93,5 @@ diagnostics.diags_names = diag1
diag1.intervals = max_step
diag1.diag_type = Full
diag1.fields_to_plot = Ex Ey Ez Bx By Bz jx jy jz part_per_cell rho
diag1.electrons.variables = w ux
diag1.positrons.variables = uz
diag1.electrons.variables = x y z w ux
diag1.positrons.variables = x y z uz
32 changes: 16 additions & 16 deletions Examples/Tests/photon_pusher/inputs_3d
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Expand Up @@ -140,19 +140,19 @@ p_dn_10.single_particle_weight = 1.0
diagnostics.diags_names = diag1
diag1.intervals = 50
diag1.diag_type = Full
diag1.p_xp_1.variables = ux uy uz
diag1.p_xn_1.variables = ux uy uz
diag1.p_yp_1.variables = ux uy uz
diag1.p_yn_1.variables = ux uy uz
diag1.p_zp_1.variables = ux uy uz
diag1.p_zn_1.variables = ux uy uz
diag1.p_dp_1.variables = ux uy uz
diag1.p_dn_1.variables = ux uy uz
diag1.p_xp_10.variables = ux uy uz
diag1.p_xn_10.variables = ux uy uz
diag1.p_yp_10.variables = ux uy uz
diag1.p_yn_10.variables = ux uy uz
diag1.p_zp_10.variables = ux uy uz
diag1.p_zn_10.variables = ux uy uz
diag1.p_dp_10.variables = ux uy uz
diag1.p_dn_10.variables = ux uy uz
diag1.p_xp_1.variables = x y z ux uy uz
diag1.p_xn_1.variables = x y z ux uy uz
diag1.p_yp_1.variables = x y z ux uy uz
diag1.p_yn_1.variables = x y z ux uy uz
diag1.p_zp_1.variables = x y z ux uy uz
diag1.p_zn_1.variables = x y z ux uy uz
diag1.p_dp_1.variables = x y z ux uy uz
diag1.p_dn_1.variables = x y z ux uy uz
diag1.p_xp_10.variables = x y z ux uy uz
diag1.p_xn_10.variables = x y z ux uy uz
diag1.p_yp_10.variables = x y z ux uy uz
diag1.p_yn_10.variables = x y z ux uy uz
diag1.p_zp_10.variables = x y z ux uy uz
diag1.p_zn_10.variables = x y z ux uy uz
diag1.p_dp_10.variables = x y z ux uy uz
diag1.p_dn_10.variables = x y z ux uy uz
2 changes: 1 addition & 1 deletion Examples/Tests/plasma_lens/inputs_3d
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Expand Up @@ -48,4 +48,4 @@ particles.repeated_plasma_lens_strengths_B = 0.0 0.0 0.0 0.0
diagnostics.diags_names = diag1
diag1.intervals = 84
diag1.diag_type = Full
diag1.electrons.variables = ux uy uz
diag1.electrons.variables = x y z ux uy uz
2 changes: 1 addition & 1 deletion Examples/Tests/plasma_lens/inputs_boosted_3d
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Expand Up @@ -50,4 +50,4 @@ particles.repeated_plasma_lens_strengths_B = 0.0 0.0 0.0 0.0
diagnostics.diags_names = diag1
diag1.intervals = 84
diag1.diag_type = Full
diag1.electrons.variables = ux uy uz
diag1.electrons.variables = x y z ux uy uz
2 changes: 1 addition & 1 deletion Examples/Tests/plasma_lens/inputs_lattice_3d
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Expand Up @@ -70,4 +70,4 @@ plasmalens4.dEdx = 200000.
diagnostics.diags_names = diag1
diag1.intervals = 84
diag1.diag_type = Full
diag1.electrons.variables = ux uy uz
diag1.electrons.variables = x y z ux uy uz
2 changes: 1 addition & 1 deletion Examples/Tests/plasma_lens/inputs_short_3d
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Expand Up @@ -52,4 +52,4 @@ particles.repeated_plasma_lens_strengths_B = 0.0 0.0 0.0 0.0
diagnostics.diags_names = diag1
diag1.intervals = 1 #84
diag1.diag_type = Full
diag1.electrons.variables = ux uy uz
diag1.electrons.variables = x y z ux uy uz
28 changes: 14 additions & 14 deletions Examples/Tests/qed/breit_wheeler/inputs_2d
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Expand Up @@ -201,19 +201,19 @@ diagnostics.diags_names = diag1
diag1.intervals = 2
diag1.diag_type = Full
diag1.fields_to_plot = Ex
diag1.p1.variables = ux uy uz w opticalDepthBW
diag1.p2.variables = ux uy uz w opticalDepthBW
diag1.p3.variables = ux uy uz w opticalDepthBW
diag1.p4.variables = ux uy uz w opticalDepthBW

diag1.ele1.variables = ux uy uz w opticalDepthQSR
diag1.ele2.variables = ux uy uz w opticalDepthQSR
diag1.ele3.variables = ux uy uz w opticalDepthQSR
diag1.ele4.variables = ux uy uz w opticalDepthQSR

diag1.pos1.variables = ux uy uz w opticalDepthQSR
diag1.pos2.variables = ux uy uz w opticalDepthQSR
diag1.pos3.variables = ux uy uz w opticalDepthQSR
diag1.pos4.variables = ux uy uz w opticalDepthQSR
diag1.p1.variables = x z ux uy uz w opticalDepthBW
diag1.p2.variables = x z ux uy uz w opticalDepthBW
diag1.p3.variables = x z ux uy uz w opticalDepthBW
diag1.p4.variables = x z ux uy uz w opticalDepthBW

diag1.ele1.variables = x z ux uy uz w opticalDepthQSR
diag1.ele2.variables = x z ux uy uz w opticalDepthQSR
diag1.ele3.variables = x z ux uy uz w opticalDepthQSR
diag1.ele4.variables = x z ux uy uz w opticalDepthQSR

diag1.pos1.variables = x z ux uy uz w opticalDepthQSR
diag1.pos2.variables = x z ux uy uz w opticalDepthQSR
diag1.pos3.variables = x z ux uy uz w opticalDepthQSR
diag1.pos4.variables = x z ux uy uz w opticalDepthQSR

diag1.format = plotfile
28 changes: 14 additions & 14 deletions Examples/Tests/qed/breit_wheeler/inputs_3d
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Expand Up @@ -201,19 +201,19 @@ diagnostics.diags_names = diag1
diag1.intervals = 2
diag1.diag_type = Full
diag1.fields_to_plot = Ex
diag1.p1.variables = ux uy uz w opticalDepthBW
diag1.p2.variables = ux uy uz w opticalDepthBW
diag1.p3.variables = ux uy uz w opticalDepthBW
diag1.p4.variables = ux uy uz w opticalDepthBW

diag1.ele1.variables = ux uy uz w opticalDepthQSR
diag1.ele2.variables = ux uy uz w opticalDepthQSR
diag1.ele3.variables = ux uy uz w opticalDepthQSR
diag1.ele4.variables = ux uy uz w opticalDepthQSR

diag1.pos1.variables = ux uy uz w opticalDepthQSR
diag1.pos2.variables = ux uy uz w opticalDepthQSR
diag1.pos3.variables = ux uy uz w opticalDepthQSR
diag1.pos4.variables = ux uy uz w opticalDepthQSR
diag1.p1.variables = x y z ux uy uz w opticalDepthBW
diag1.p2.variables = x y z ux uy uz w opticalDepthBW
diag1.p3.variables = x y z ux uy uz w opticalDepthBW
diag1.p4.variables = x y z ux uy uz w opticalDepthBW

diag1.ele1.variables = x y z ux uy uz w opticalDepthQSR
diag1.ele2.variables = x y z ux uy uz w opticalDepthQSR
diag1.ele3.variables = x y z ux uy uz w opticalDepthQSR
diag1.ele4.variables = x y z ux uy uz w opticalDepthQSR

diag1.pos1.variables = x y z ux uy uz w opticalDepthQSR
diag1.pos2.variables = x y z ux uy uz w opticalDepthQSR
diag1.pos3.variables = x y z ux uy uz w opticalDepthQSR
diag1.pos4.variables = x y z ux uy uz w opticalDepthQSR

diag1.format = plotfile
18 changes: 9 additions & 9 deletions Examples/Tests/qed/quantum_synchrotron/inputs_2d
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Expand Up @@ -178,12 +178,12 @@ diagnostics.diags_names = diag1
diag1.intervals = 2
diag1.diag_type = Full
diag1.fields_to_plot = Ex
diag1.p1.variables = ux uy uz w opticalDepthQSR
diag1.p2.variables = ux uy uz w opticalDepthQSR
diag1.p3.variables = ux uy uz w opticalDepthQSR
diag1.p4.variables = ux uy uz w opticalDepthQSR

diag1.qsp_1.variables = ux uy uz w opticalDepthBW
diag1.qsp_2.variables = ux uy uz w opticalDepthBW
diag1.qsp_3.variables = ux uy uz w opticalDepthBW
diag1.qsp_4.variables = ux uy uz w opticalDepthBW
diag1.p1.variables = x z ux uy uz w opticalDepthQSR
diag1.p2.variables = x z ux uy uz w opticalDepthQSR
diag1.p3.variables = x z ux uy uz w opticalDepthQSR
diag1.p4.variables = x z ux uy uz w opticalDepthQSR

diag1.qsp_1.variables = x z ux uy uz w opticalDepthBW
diag1.qsp_2.variables = x z ux uy uz w opticalDepthBW
diag1.qsp_3.variables = x z ux uy uz w opticalDepthBW
diag1.qsp_4.variables = x z ux uy uz w opticalDepthBW
18 changes: 9 additions & 9 deletions Examples/Tests/qed/quantum_synchrotron/inputs_3d
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Expand Up @@ -178,12 +178,12 @@ diagnostics.diags_names = diag1
diag1.intervals = 2
diag1.diag_type = Full
diag1.fields_to_plot = Ex
diag1.p1.variables = ux uy uz w opticalDepthQSR
diag1.p2.variables = ux uy uz w opticalDepthQSR
diag1.p3.variables = ux uy uz w opticalDepthQSR
diag1.p4.variables = ux uy uz w opticalDepthQSR

diag1.qsp_1.variables = ux uy uz w opticalDepthBW
diag1.qsp_2.variables = ux uy uz w opticalDepthBW
diag1.qsp_3.variables = ux uy uz w opticalDepthBW
diag1.qsp_4.variables = ux uy uz w opticalDepthBW
diag1.p1.variables = x y z ux uy uz w opticalDepthQSR
diag1.p2.variables = x y z ux uy uz w opticalDepthQSR
diag1.p3.variables = x y z ux uy uz w opticalDepthQSR
diag1.p4.variables = x y z ux uy uz w opticalDepthQSR

diag1.qsp_1.variables = x y z ux uy uz w opticalDepthBW
diag1.qsp_2.variables = x y z ux uy uz w opticalDepthBW
diag1.qsp_3.variables = x y z ux uy uz w opticalDepthBW
diag1.qsp_4.variables = x y z ux uy uz w opticalDepthBW
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