目标:
- 提供一些生物信息学学习资源
- 提供生物信息学的概要
- Nature Method
- Nature Genetics
- Bioinformatics
- BMC Bioinformatics
- Nucleic Acids Research
- Genome Research
- CEL-Seq
- CirSeq
- CLaP
- CytoSeq
- Digital RNA Sequencing
- DP-Seq
- Drop-Seq
- Hi-SCL
- InDrop
- MARS-Seq
- Nuc-Seq
- PAIR
- Quartz-Seq
- scM&T-Seq
- SCRB-Seq
- scRNA-Seq
- scTrio-seq
- Smart-Seq
- Smart-Seq2
- snRNA-Seq
- STRT-Seq
- SUPeR-Seq
- TCR-LA-MC PCR
- TIVA
- UMI
- 5C
- Div-Seq
- FRISCR
- TCR Chain Pairing
- AbPair
- 2P-Seq
- 3'NT Method
- 3P-Seq
- 3Seq
- 3′-Seq
- 5′-GRO-Seq
- BruChase-Seq
- BruDRB-Seq
- Bru-Seq
- CAGE
- CHART
- ChIRP
- ClickSeq
- GRO-seq
- NET-Seq
- PAL-Seq
- PARE-Seq
- PEAT
- PRO-Cap
- PRO-Seq
- RAP
- RARseq
- RASL-Seq
- RNA-Seq
- SMORE-Seq
- TAIL-Seq
- TATL-Seq
- TIF-Seq
- TL-Seq
- 4sUDRB-Seq
- CaptureSeq
- cP-RNA-Seq
- FRT-Seq
- GMUCT
- mNET-Seq
- AGO-CLIP
- CLASH
- CLIP-Seq or HITS-CLIP
- DLAF
- eCLIP
- hiCLIP
- iCLIP
- miR-CLIP
- miTRAP
- PAR-CLIP
- PIP-Seq
- Pol II CLIP
- RBNS
- Ribo-Seq or ARTSeq
- RIP-Seq
- TRAP-Seq
- TRIBE
- BrdU-CLIP
- HiTS-RAP
- irCLIP
- 2b-RAD
- CPT-seq
- ddRADseq
- Digenome-seq
- EC-seq
- hyRAD
- RAD-Seq
- Rapture
- RC-Seq
- Repli-Seq
- SLAF-seq
- TC-Seq
- Tn-Seq/INSeq
- Bubble-Seq
- NSCR
- NS-Seq
- Rep-Seq/Ig-Seq/MAF
- DNaseI Seq or DNase-Seq
- Pu-seq
- 3-C/Capture-C/Hi-C
- 4C-seq
- 5C
- ATAC-Seq/Fast-ATAC
- CATCH_IT
- Chem-seq
- ChIA-PET
- ChIPmentation
- ChIP-Seq/HT-ChIP/ChIP-exo/Mint-ChIP
- DamID
- DNase I SIM
- FAIRE-seq/Sono-Seq
- FiT-Seq
- HiTS-FLIP
- MINCE-seq
- MNase-Seq/MAINE-Sequcleo-Sequc-seq
- MPE-seq
- NG Capture-C
- NOMe-Seq
- ORGANIC
- PAT-ChIP
- PB_seq
- SELEX or SELEX-seq / HT-SELEX
- THS-seq
- UMI-4C
- X-ChIP-seq
- Aba-seq
- BisChIP-Seq/ChIP-BS-Seq/ChIP-BMS
- BSAS
- BSPP
- BS-Seq/Bisulfite-Seq/WGBS
- CAB-Seq
- EpiRADseq
- fCAB-seq
- fC-CET
- fC-Seal
- hMeDIP-seq
- JBP1-seq
- MAB-seq
- MBDCap-seq/MethylCap-Seq/MiGS
- MeDIP-Seq/DIP-seq
- MIRA
- MRE-Seq and Methyl-Seq
- xBS-Seq
- PBAT
- redBS-Seq/caMAB-seq
- RRBS-Seq
- RRMAB-seq
- TAB-Seq
- TAmC-Seq
- T-WGBS
- Safe-SeqS
- scAba-seq
- scATAC-Seq (Cell index variation)
- scATAC-Seq (Microfluidics variation)
- scBS-Seq
- scM&T-Seq
- scRC-Seq
- SMDB
- smMIP
- G&T-Seq
- 5C
- DR-Seq
- G&T-Seq
- MALBAC
- MDA
- MIDAS/IMS-MDA/ddMDA
- scM&T-Seq
- Drop-ChIP/scChIP-seq
- Duplex-Seq
- MIPSTR
- nuc-seq/SNES
- OS-Seq
- UCSC
- NCBI
- ExPASy
- EMBL-EBI
- TCGA
- COSMIC
- St. Jude PeCan Data Portal
- BIG Data Center
- DAVID Bioinformatics Resources
- cBioPortal
- Oncotator
- QIAGEN Analysis Platform
- Wordcloud
- Omictools
- iCoMut
- UniProt
- Pfam
- SMART
- STRING
- DiseaseEnhancer
- SEECancer
- eQTL Browser
- Cistrome Project
- VarCards
- superdrug2
- MeDReaders
- ECOdrug
- rSNPBase3.0
- MNDR
- MSDD
- funcoup
- proteinatlas
- DGIdb
- Drugbank
- InterPro
- ncbi-biosystems
- denovo-db
- The Human Phenotype Ontology (HPO)
- FANTOM
- dbNSFP
- regSNP-intron
- RADAR
- DARNED
- REDIportal
- LNCediting
- EggNOG
- MiSTIC
- DTMiner
- PDBFlex
- Cancer3d
- Dsysmap
- CBS Prediction Servers
- wANNOVAR
- Harmonizome
- GDA
- CLUE
- CMAP
- pssmsearch
- bammmotif
- LOLAweb
- GeNets
- HiCExplorer
- paintomics
- kinact
- VAReporter
- SNPnexus
- Oncoscape
- cellmarker
- awesome
- hmdb
- redoxdb
- instruct
- consensuspathdb
- phosphonetworks
- dbsno
- hpdi
- islandviewer
- appris
- rbpdb
- CIViC
- DoCM
- ClinVar
- Intogen
- Cancer Hotspots
- DisGeNET
- Cancer Biomarkers database
- OncoKB
- LncRNADisease
- fusiongdb
- sedb
- pmkb
- ewasdb
- dcdb
- CSCD
- AtCircDB
- CircNet
- circBase
- circRNADb
- exoRBase
- EVLncRNAs
- NONCODE
- MiTranscriptome
- FANTOM CAT
- lnc2cancer2
- sm2mir
- oncomirdb
- mircancer
- lncipedia
- mirnest
- mirtarbase
- mirdb
- BWA
- STAR
- TMAP
- NovoAlign
- GMAP
- bowtie
- bowtie2
- tophat2
- hisat2
- Edean
- ABySS
- SSAHA2
- oases
- Velvet
- Trinity
- MapSplice2
- RUM
- MECAT
- DART
- rHAT
- taxmaps
- MARVEL
- vg
- GATK
- MuTect
- lofreq
- VarScan2
- freebayes
- TVC
- SomaticSniper
- speedseq
- FusionCatcher
- svtoolkit
- pindel
- breakdancer
- delly
- CNVkit
- speedseq
- GRIDSS
- PancanQTL
- TumorFusions
- SVScore
- SVTools
- RDDpred
- iseq
- deepvariant
- SV2
- facets
- MutScan
- svaba
- manta
- JAFFA
- Picky
- CREST
- Control-FREEC
- Strelka:
- GISTIC2
- BreaKmer
- deTiN
- vadir
- ANNOVAR
- SnpEff
- gemini
- VEP
- Variant Annotation Integrator
- vcfanno
- pcgr
- annovarR
- OncodriveCLUST
- bystro
- contest
- ProteinPaint
- AGFusion
- GenomeUPlot
- BreakPointSurveyor
- chimeraviz
- Oncoprinter
- MutationMapper
- pv
- g2s
- NGB
- biopython
- IRanges
- org.Hs.eg.db
- Biobase
- GenomicAlignments
- GenomicRanges
- Rsamtools
- jvarkit
- htslib
- samtools
- bedtools
- vcftools
- bcftools
- bamtools
- maftools
- bamUtil
- vcflib
- samstat
- seqtk
- sratools
- bcl2fastq2
- ucsc_utils
- MeQA
- IdCheck
- SAMBLASTER
- ngstk
- BioInstaller
- ChromHMM
- ABSOLUTE
- HAPSEG
- Atlas-SNP, Atlas2 Suite
- Beagle
- CIBERSORT
- biobloom
- APAtrap
- phenopredict
- recount
- bart
- LSMM (Latent Sparse Mixed Model)
- vcf2maf
- r2d3
- liteq
- ReLaXed
- dash
- threadpool
- marina
- paradigm
- medcalc
- GraphPad
- ImageJ
- SPSS
- R
- gvmap
- easySVG
- hexmapr
- clustergrammer
- chromVAR
- echarts
- plotly
- qvalue
- GenVisR
- r-color-palettes
- sequenza
- opencpu
- ggthemr
- paletter
- ggdag
- ggseqlogo
- threejs
- higlass
- Teamviewer
- Sunlogin
- Splashtop
- Chrome Remote Desktop app
- Logmein
- PC Anywhere
- GoToMyPC
- Radmin
- UltraVNC
- R packages
- stringr
- Bioconductor Tutorial
- limma
- 30分钟学会ggplot2
- R Graphics Cookbook
- Introduction to data.table
- RSQLite
- R Graphics
- Wordcloud2
- SPSS Beginners Tutorials
- Machine learning
- Deep learning
- Loss function
- Maximum likelihood estimation
- Bayes' theorem
- Perceptron
- SVM
- k-nearest neighbors algorithm
- Convolutional Neural Network
- K-Means
- HMM
- STAT115 - HMM PPT
- 机器学习常用算法
- 机器学习资源列表
- Review:Deep learning, genomics, and precision medicine
- ML book list: