Scripts for de novo genome assembly

By Yu Wan

First release: 2 June 2022; latest update: 29 October 2024

1. Hybrid assembly

Long-read quality control: TBC
Assemble subsets of long reads using Flye, Raven, and miniasm: trycycler_assemble_read_subsets.sh
Polishing assemblies: TBC

2. Short-read assembly

Extract contig statistics from Shovill assemblies: extract_shovill_contig_stats.sh