From 51f705de1db69ae9cf3ba0f95f95f134c5801493 Mon Sep 17 00:00:00 2001 From: "UseGalaxy.EU Jenkins Bot" Date: Sun, 14 Apr 2024 22:21:01 +0200 Subject: [PATCH] Autoupdate tool blog post --- _posts/2024-04-14-tool-update.md | 95 ++++++++++++++++++++++++++++++++ 1 file changed, 95 insertions(+) create mode 100644 _posts/2024-04-14-tool-update.md diff --git a/_posts/2024-04-14-tool-update.md b/_posts/2024-04-14-tool-update.md new file mode 100644 index 000000000..c7e59a8e4 --- /dev/null +++ b/_posts/2024-04-14-tool-update.md @@ -0,0 +1,95 @@ +--- +site: freiburg +tags: [tools] +title: UseGalaxy.eu Tool Updates for 2024-04-14 +supporters: +- denbi +- elixir +--- + +On 2024-04-14, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in [Jenkins Build #440](https://build.galaxyproject.eu/job/usegalaxy-eu/job/install-tools/#440/) + + +## GIS Data Handling + +- otb_band_math was updated to [d266345e510d](https://toolshed.g2.bx.psu.edu/view/ecology/otb_band_math/d266345e510d) +- otb_mean_shift_smoothing was updated to [dd397752ad21](https://toolshed.g2.bx.psu.edu/view/ecology/otb_mean_shift_smoothing/dd397752ad21) + +## Get Data + +- iabiodiv_smartbiodiv_med_environ was updated to [ca00b2eabdf3](https://toolshed.g2.bx.psu.edu/view/ecology/iabiodiv_smartbiodiv_med_environ/ca00b2eabdf3) + +## QIIME 2 + +- qiime2__deblur__denoise_16S was updated to [2572fc0f88f2](https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__deblur__denoise_16S/2572fc0f88f2) +- qiime2__deblur__denoise_16S was updated to [b883cbea5623](https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__deblur__denoise_16S/b883cbea5623) + +## Proteomics + +- openms_openpepxl was updated to [a2a842b00f9c](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_openpepxl/a2a842b00f9c) +- openms_percolatoradapter was updated to [0fc9ae55bcfc](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_percolatoradapter/0fc9ae55bcfc) +- openms_percolatoradapter was updated to [e7881a82b56d](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_percolatoradapter/e7881a82b56d) +- openms_xfdr was updated to [81402a5e4173](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_xfdr/81402a5e4173) +- openms_xfdr was updated to [9a6e3bb0f358](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_xfdr/9a6e3bb0f358) +- qupath_roi_splitter was updated to [7bee859bbd11](https://toolshed.g2.bx.psu.edu/view/galaxyp/qupath_roi_splitter/7bee859bbd11) + +## Metabolomics + +- sirius_csifingerid was updated to [9e6bf7278257](https://toolshed.g2.bx.psu.edu/view/computational-metabolomics/sirius_csifingerid/9e6bf7278257) + +## Annotation + +- chewbbaca_allelecall was updated to [9de4eeb0023b](https://toolshed.g2.bx.psu.edu/view/iuc/chewbbaca_allelecall/9de4eeb0023b) +- chewbbaca_allelecallevaluator was updated to [77a84fa4a02b](https://toolshed.g2.bx.psu.edu/view/iuc/chewbbaca_allelecallevaluator/77a84fa4a02b) +- chewbbaca_createschema was updated to [4e61ec4fd5f5](https://toolshed.g2.bx.psu.edu/view/iuc/chewbbaca_createschema/4e61ec4fd5f5) +- chewbbaca_downloadschema was updated to [18d7d8582206](https://toolshed.g2.bx.psu.edu/view/iuc/chewbbaca_downloadschema/18d7d8582206) +- chewbbaca_extractcgmlst was updated to [743125c3ac12](https://toolshed.g2.bx.psu.edu/view/iuc/chewbbaca_extractcgmlst/743125c3ac12) +- chewbbaca_joinprofiles was updated to [a370301694bc](https://toolshed.g2.bx.psu.edu/view/iuc/chewbbaca_joinprofiles/a370301694bc) +- chewbbaca_nsstats was updated to [ebbbb3265867](https://toolshed.g2.bx.psu.edu/view/iuc/chewbbaca_nsstats/ebbbb3265867) +- chewbbaca_prepexternalschema was updated to [6f7cfce9494d](https://toolshed.g2.bx.psu.edu/view/iuc/chewbbaca_prepexternalschema/6f7cfce9494d) + +## Assembly + +- merqury was updated to [eb7b00ec347d](https://toolshed.g2.bx.psu.edu/view/iuc/merqury/eb7b00ec347d) +- pairtools_parse was updated to [26ed6ceeeec1](https://toolshed.g2.bx.psu.edu/view/iuc/pairtools_parse/26ed6ceeeec1) + +## Evolution + +- iqtree was updated to [24d024316465](https://toolshed.g2.bx.psu.edu/view/iuc/iqtree/24d024316465) + +## FASTA/FASTQ + +- bbtools_bbduk was updated to [1c427e24fb79](https://toolshed.g2.bx.psu.edu/view/iuc/bbtools_bbduk/1c427e24fb79) +- bbtools_bbmerge was updated to [82ced0e47b9d](https://toolshed.g2.bx.psu.edu/view/iuc/bbtools_bbmerge/82ced0e47b9d) +- bbtools_tadpole was updated to [eaeb387d1244](https://toolshed.g2.bx.psu.edu/view/iuc/bbtools_tadpole/eaeb387d1244) + +## Mapping + +- bbtools_bbmap was updated to [b394de3cf6e8](https://toolshed.g2.bx.psu.edu/view/iuc/bbtools_bbmap/b394de3cf6e8) + +## Metagenomic Analysis + +- bigscape was updated to [353b2de0eabf](https://toolshed.g2.bx.psu.edu/view/iuc/bigscape/353b2de0eabf) +- seqsero2 was updated to [e95aceb0e32c](https://toolshed.g2.bx.psu.edu/view/iuc/seqsero2/e95aceb0e32c) + +## Nanopore + +- nanoplot was updated to [a02b8b3f5a0c](https://toolshed.g2.bx.psu.edu/view/iuc/nanoplot/a02b8b3f5a0c) + +## Phylogenetics + +- hyphy_prime was updated to [4072360120e4](https://toolshed.g2.bx.psu.edu/view/iuc/hyphy_prime/4072360120e4) + +## RNA Analysis + +- kallisto_pseudo was updated to [2953303df011](https://toolshed.g2.bx.psu.edu/view/iuc/kallisto_pseudo/2953303df011) +- rseqc was updated to [27e16a30667a](https://toolshed.g2.bx.psu.edu/view/nilesh/rseqc/27e16a30667a) + +## Variant Calling + +- bbtools_callvariants was updated to [f36a69c3729a](https://toolshed.g2.bx.psu.edu/view/iuc/bbtools_callvariants/f36a69c3729a) + +## None + +- data_manager_diamond_database_builder was updated to [4a08b7b76b78](https://toolshed.g2.bx.psu.edu/view/iuc/data_manager_diamond_database_builder/4a08b7b76b78) +