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| --- | ||
| site: freiburg | ||
| tags: [tools] | ||
| title: UseGalaxy.eu Tool Updates for 2024-02-11 | ||
| supporters: | ||
| - denbi | ||
| - elixir | ||
| --- | ||
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| On 2024-02-11, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in [Jenkins Build #431](https://build.galaxyproject.eu/job/usegalaxy-eu/job/install-tools/#431/) | ||
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| ## Metabolomics | ||
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| - matchms_add_key was updated to [3c82adf06cd5](https://toolshed.g2.bx.psu.edu/view/recetox/matchms_add_key/3c82adf06cd5) | ||
| - matchms_convert was updated to [165f303aa2d1](https://toolshed.g2.bx.psu.edu/view/recetox/matchms_convert/165f303aa2d1) | ||
| - matchms_convert was updated to [865d1539e64f](https://toolshed.g2.bx.psu.edu/view/recetox/matchms_convert/865d1539e64f) | ||
| - matchms_filtering was updated to [6161895506ff](https://toolshed.g2.bx.psu.edu/view/recetox/matchms_filtering/6161895506ff) | ||
| - matchms_fingerprint_similarity was updated to [5be32c7ce669](https://toolshed.g2.bx.psu.edu/view/recetox/matchms_fingerprint_similarity/5be32c7ce669) | ||
| - matchms_formatter was updated to [23d4bc72c505](https://toolshed.g2.bx.psu.edu/view/recetox/matchms_formatter/23d4bc72c505) | ||
| - matchms_formatter was updated to [34439ffa6a60](https://toolshed.g2.bx.psu.edu/view/recetox/matchms_formatter/34439ffa6a60) | ||
| - matchms_metadata_export was updated to [c01868645f1b](https://toolshed.g2.bx.psu.edu/view/recetox/matchms_metadata_export/c01868645f1b) | ||
| - matchms_metadata_match was updated to [41cf8dd03e42](https://toolshed.g2.bx.psu.edu/view/recetox/matchms_metadata_match/41cf8dd03e42) | ||
| - matchms_metadata_match was updated to [91b4b0c9a384](https://toolshed.g2.bx.psu.edu/view/recetox/matchms_metadata_match/91b4b0c9a384) | ||
| - matchms_metadata_merge was updated to [3a37748f6c95](https://toolshed.g2.bx.psu.edu/view/recetox/matchms_metadata_merge/3a37748f6c95) | ||
| - matchms_metadata_merge was updated to [99ad7552fb10](https://toolshed.g2.bx.psu.edu/view/recetox/matchms_metadata_merge/99ad7552fb10) | ||
| - matchms_networking was updated to [2200e9b7a2b3](https://toolshed.g2.bx.psu.edu/view/recetox/matchms_networking/2200e9b7a2b3) | ||
| - matchms_networking was updated to [3b512cb31cb5](https://toolshed.g2.bx.psu.edu/view/recetox/matchms_networking/3b512cb31cb5) | ||
| - matchms_remove_key was updated to [358a151ab81e](https://toolshed.g2.bx.psu.edu/view/recetox/matchms_remove_key/358a151ab81e) | ||
| - matchms_spectral_similarity was updated to [50229f084c4e](https://toolshed.g2.bx.psu.edu/view/recetox/matchms_spectral_similarity/50229f084c4e) | ||
| - matchms_spectral_similarity was updated to [dbe94781524a](https://toolshed.g2.bx.psu.edu/view/recetox/matchms_spectral_similarity/dbe94781524a) | ||
| - matchms_split was updated to [114617e6ad33](https://toolshed.g2.bx.psu.edu/view/recetox/matchms_split/114617e6ad33) | ||
| - matchms_subsetting was updated to [4ef214cf07c1](https://toolshed.g2.bx.psu.edu/view/recetox/matchms_subsetting/4ef214cf07c1) | ||
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| ## QIIME 2 | ||
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| - qiime2__deblur__denoise_16S was updated to [2572fc0f88f2](https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__deblur__denoise_16S/2572fc0f88f2) | ||
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| ## ChemicalToolBox | ||
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| - fastpca was updated to [dd195f7a791c](https://toolshed.g2.bx.psu.edu/view/chemteam/fastpca/dd195f7a791c) | ||
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| ## Proteomics | ||
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| - openms_openpepxl was updated to [a2a842b00f9c](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_openpepxl/a2a842b00f9c) | ||
| - openms_percolatoradapter was updated to [0fc9ae55bcfc](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_percolatoradapter/0fc9ae55bcfc) | ||
| - openms_percolatoradapter was updated to [e7881a82b56d](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_percolatoradapter/e7881a82b56d) | ||
| - openms_xfdr was updated to [81402a5e4173](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_xfdr/81402a5e4173) | ||
| - openms_xfdr was updated to [9a6e3bb0f358](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_xfdr/9a6e3bb0f358) | ||
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| ## Assembly | ||
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| - cactus_cactus was updated to [098506c54016](https://toolshed.g2.bx.psu.edu/view/galaxy-australia/cactus_cactus/098506c54016) | ||
| - cactus_export was updated to [c44f824c051a](https://toolshed.g2.bx.psu.edu/view/galaxy-australia/cactus_export/c44f824c051a) | ||
| - hifiasm_meta was updated to [213df31ba341](https://toolshed.g2.bx.psu.edu/view/galaxy-australia/hifiasm_meta/213df31ba341) | ||
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| ## Graph/Display Data | ||
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| - export2graphlan was updated to [635c90a27692](https://toolshed.g2.bx.psu.edu/view/iuc/export2graphlan/635c90a27692) | ||
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| ## Climate Analysis | ||
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| - c3s was updated to [bd153c794da1](https://toolshed.g2.bx.psu.edu/view/climate/c3s/bd153c794da1) | ||
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| ## Annotation | ||
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| - fargene was updated to [b982a9ea939c](https://toolshed.g2.bx.psu.edu/view/iuc/fargene/b982a9ea939c) | ||
| - hamronize_summarize was updated to [f8bcc852f6b3](https://toolshed.g2.bx.psu.edu/view/iuc/hamronize_summarize/f8bcc852f6b3) | ||
| - hamronize_tool was updated to [e13b801516dd](https://toolshed.g2.bx.psu.edu/view/iuc/hamronize_tool/e13b801516dd) | ||
| - mitos2 was updated to [b815ec682418](https://toolshed.g2.bx.psu.edu/view/iuc/mitos2/b815ec682418) | ||
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| ## Convert Formats | ||
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| - biom_convert was updated to [091bb5922a82](https://toolshed.g2.bx.psu.edu/view/iuc/biom_convert/091bb5922a82) | ||
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| ## Evolution | ||
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| - codeml was updated to [dba114391c98](https://toolshed.g2.bx.psu.edu/view/iuc/codeml/dba114391c98) | ||
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| ## FASTA/FASTQ | ||
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| - bbtools_bbduk was updated to [0840ba83860c](https://toolshed.g2.bx.psu.edu/view/iuc/bbtools_bbduk/0840ba83860c) | ||
| - bbtools_bbmerge was updated to [6d084528a6f1](https://toolshed.g2.bx.psu.edu/view/iuc/bbtools_bbmerge/6d084528a6f1) | ||
| - bbtools_tadpole was updated to [e4fb34b79770](https://toolshed.g2.bx.psu.edu/view/iuc/bbtools_tadpole/e4fb34b79770) | ||
| - fastqe was updated to [c1a33f603da2](https://toolshed.g2.bx.psu.edu/view/iuc/fastqe/c1a33f603da2) | ||
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| ## Mapping | ||
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| - bbtools_bbmap was updated to [3171f7f52576](https://toolshed.g2.bx.psu.edu/view/iuc/bbtools_bbmap/3171f7f52576) | ||
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| ## Metagenomic Analysis | ||
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| - dram_annotate was updated to [0515750e7b10](https://toolshed.g2.bx.psu.edu/view/iuc/dram_annotate/0515750e7b10) | ||
| - dram_distill was updated to [9a0944d08a99](https://toolshed.g2.bx.psu.edu/view/iuc/dram_distill/9a0944d08a99) | ||
| - dram_merge_annotations was updated to [866be6c60810](https://toolshed.g2.bx.psu.edu/view/iuc/dram_merge_annotations/866be6c60810) | ||
| - dram_neighborhoods was updated to [669459119c20](https://toolshed.g2.bx.psu.edu/view/iuc/dram_neighborhoods/669459119c20) | ||
| - dram_strainer was updated to [5b577e90f822](https://toolshed.g2.bx.psu.edu/view/iuc/dram_strainer/5b577e90f822) | ||
| - dram_strainer was updated to [9c8f2cfb70ba](https://toolshed.g2.bx.psu.edu/view/iuc/dram_strainer/9c8f2cfb70ba) | ||
| - kraken2 was updated to [20e2f64aa1fe](https://toolshed.g2.bx.psu.edu/view/iuc/kraken2/20e2f64aa1fe) | ||
| - phyloseq_from_dada2 was updated to [b85ba18a8f36](https://toolshed.g2.bx.psu.edu/view/iuc/phyloseq_from_dada2/b85ba18a8f36) | ||
| - phyloseq_plot_ordination was updated to [92e77800ef2c](https://toolshed.g2.bx.psu.edu/view/iuc/phyloseq_plot_ordination/92e77800ef2c) | ||
| - phyloseq_plot_richness was updated to [1ff178d1757e](https://toolshed.g2.bx.psu.edu/view/iuc/phyloseq_plot_richness/1ff178d1757e) | ||
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| ## Phylogenetics | ||
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| - hyphy_prime was updated to [4072360120e4](https://toolshed.g2.bx.psu.edu/view/iuc/hyphy_prime/4072360120e4) | ||
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| ## RNA Analysis | ||
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| - limma_voom was updated to [119b069fc845](https://toolshed.g2.bx.psu.edu/view/iuc/limma_voom/119b069fc845) | ||
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| ## Variant Calling | ||
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| - bbtools_callvariants was updated to [adec76ebc868](https://toolshed.g2.bx.psu.edu/view/iuc/bbtools_callvariants/adec76ebc868) | ||
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| ## None | ||
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| - data_manager_diamond_database_builder was updated to [4a08b7b76b78](https://toolshed.g2.bx.psu.edu/view/iuc/data_manager_diamond_database_builder/4a08b7b76b78) | ||
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